Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02787 ATGGACCCCCATCACCTCTCAAACCCTCCTCCTCATCTCGATCGCTCCGCCATGGATGACCACCATATCCTTCACCATCATCACCACGTTCATGATCTTGATTCTATTTGGCCGTCGTTTTTGCCTTTTCAACTCTCTGATCATCACGATCAACAACTCCCCACCTCCTCCACCCATTTTGTAATAGGCTACAGTACTCCAAGTTCTGGAACAGGTGATGATGAAGAAGAGCCGGAAGAAGAGTTAGGTGCGATGAAGGAGATGATGTATAAGATTGCAGCAATGCAGCCGGTGGACATCGACCCGTCAACCATTCGGAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCCCAAAGCATCGCGGCTCGTCTTCGACGAGAGAGGATTAGCGAAAAGATCAGGATTCTTCAAAGGCTCGTGCCTGGAGGGACAAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTACAGTCAAGTCAACCGCCGCAACAGCCAAGCACCAGCGGTGGAGCCACCACCGCTGGCGGCGGAGGAGGGTGGCATTTTCCATTCAATAAGGCTAATGGTTCAACCTCCTCGTCCACTTCCATGGAAAATACTCCTGCTATTACACCAACAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTAA 705 49.79 MDPHHLSNPPPHLDRSAMDDHHILHHHHHVHDLDSIWPSFLPFQLSDHHDQQLPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPSTSGGATTAGGGGGWHFPFNKANGSTSSSTSMENTPAITPTGWKVCLADSSSWN* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24304724 24306996 - CsaV3_6G041730.1 Csa06g02787 534414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02787 234 Pfam Helix-loop-helix DNA-binding domain 124 164 IPR011598 GO:0046983
Csa06g02787 234 MobiDBLite consensus disorder prediction 200 218 - -
Csa06g02787 234 CDD bHLH_AtIND_like 116 171 - -
Csa06g02787 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 174 IPR036638 GO:0046983
Csa06g02787 234 MobiDBLite consensus disorder prediction 172 188 - -
Csa06g02787 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Csa06g02787 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 217 IPR045843 GO:0003700|GO:0006355
Csa06g02787 234 SMART finulus 121 170 IPR011598 GO:0046983
Csa06g02787 234 Gene3D - 118 181 IPR036638 GO:0046983
Csa06g02787 234 MobiDBLite consensus disorder prediction 172 218 - -
Csa06g02787 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02654 Csa-Chr1:23567571 Csa06g02787 Csa-Chr6:24304724 1.06E-12 dispersed
Csa02g01465 Csa-Chr2:14091802 Csa06g02787 Csa-Chr6:24304724 1.62E-46 dispersed
Csa02g01941 Csa-Chr2:18201502 Csa06g02787 Csa-Chr6:24304724 2.68E-44 dispersed
Csa03g04106 Csa-Chr3:35995420 Csa06g02787 Csa-Chr6:24304724 1.32E-30 dispersed
Csa04g01635 Csa-Chr4:15704947 Csa06g02787 Csa-Chr6:24304724 3.06E-23 dispersed
Csa06g02787 Csa-Chr6:24304724 Csa07g02411 Csa-Chr7:22142359 1.92E-31 dispersed
Csa06g02787 Csa-Chr6:24304724 Csa04g02418 Csa-Chr4:24394485 2.01E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32103 PF00010 HLH 1.50E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02787 - - csv:101222266 426.787