Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02795 ATGGTGAAAGATGACTTATGTATTACAATTCCCACCGATTTCAGGTGTCCCATCTCTCTAGACGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTCACTTACGATCGTTCCAGTATTCAGAAATGGCTTGATAATGGAAACAACACTTGTCCTGCCACCATGCAGGTCCTTCAAACCAAGGACTTTGTACCTAACCACAATCTCCACCGTCTCATTCAGATTTGGTCCGATTCCCTTCACCAACGCCTTCACTCCCCTCTTTCTGACTCTTCTCTCTCCTCCGATCAACTTCTCCGCCTCATCAACCATCAATCACGTGCTGATTCTCTTCCTCGCCTTCTCTCTTTTGCTTCTGAATCCCTCGACAATCGGAGGCTTCTCTCTGGAATTGACGGACTCCTCCCCCTACTTGTCGATCTTCTTTGCAATGTCCATGCCGGTGATTTGCTTGACCAAGCGGTCAGGCTCTTGCATTTGATTCGGACTGAGATTGGGGATAAGGAGAGGTTTGTCAAGACCATTTTGAATACCGATCGTAATTCTATTTCGTCTCTGCTTTTGATTCTGCGCAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTCCTGGAATATCTCGCAATCGACGCCGAAGCGAAGATCCTAATTGCAGAAACAGATGGATTGATGCAAGAATTACTCAAATTAATCAATTCTCAAAACGATACAACCCTAATTGAATCCGTACTATCATGCCTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTACAACTCGGAGTCATAAAATCAGTAACCAAGCTTCTCTCGGAGTCGAACTCGAGTTCAAGCAGTTCGATGACGGAGAAGCTTCTGAAAGTTCTAGAAACGGCATCGACGGTGAGAGAAGGAAGAACAGAGATCGGAGAAGACTCCGTATGCGTAGCGGCGATAGTACAGAAAGTGTTGAAGGTATCGAACGCCGCGACAGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGGAGAGGCGTTGACGAAGGCGAATGGCTTAACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCACCGCCGGTACGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGAATCAATTCGAAATCGTGCCTATCGAGCTACGATACAAAAACTACACATATCATGCCATGTTAA 1215 45.68 MVKDDLCITIPTDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKDFVPNHNLHRLIQIWSDSLHQRLHSPLSDSSLSSDQLLRLINHQSRADSLPRLLSFASESLDNRRLLSGIDGLLPLLVDLLCNVHAGDLLDQAVRLLHLIRTEIGDKERFVKTILNTDRNSISSLLLILRKGTVELKICSANLLEYLAIDAEAKILIAETDGLMQELLKLINSQNDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSSSMTEKLLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNAATEHAVTTLWSVCYLFRDEKAGEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24372700 24375096 - CsaV3_6G041810.1 Csa06g02795 534422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02795 404 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Csa06g02795 404 SUPERFAMILY ARM repeat 126 386 IPR016024 -
Csa06g02795 404 SUPERFAMILY RING/U-box 6 78 - -
Csa06g02795 404 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Csa06g02795 404 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 404 - -
Csa06g02795 404 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Csa06g02795 404 PANTHER WDSAM1 PROTEIN 4 404 IPR045185 GO:0061630
Csa06g02795 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Csa06g02795 404 Gene3D - 157 393 IPR011989 -
Csa06g02795 404 CDD RING-Ubox_PUB 14 56 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02795 Csa-Chr6:24372700 Csa05g01122 Csa-Chr5:11451621 7.88E-41 dispersed
Csa02g01598 Csa-Chr2:15120226 Csa06g02795 Csa-Chr6:24372700 9.85E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02795 - - csv:101207530 729.939