Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02797 ATGACTCGAGACGGCGTACAATTTGACGCCGCGAAACGATCATATCGTAATGCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCTAATGTAATCGGCAATATCTTGAAGAACAGAGGAGAATACGTAAAAGCCCTTAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCGACGTGCCAGTCTCTGGGCGAGGTCTATCTTAGGCTTGAACACTTTAAAGATGCTCTAATTTATCAGAAGAAACATTTAGAGTTAGCCAAAAATGCTAATGACCTCGTGGAACAGCAAAGGGCTAACACTCAACTGGGTCGTACTTACCATGAGCTTTTTTTGAAATCTGATGATGACCATCTTTCAGTAAGAAATGCCAAAAAGTATTTCAGAGCTGCCATGGAACTTGCAAAGTTTCTGAAAGATCACCCACCAAAAATTGGATGTTCATTCCTCAAGGAATATGTTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGAGGCCAAAAATATCTTAACAGAAGGACTAGAGATTTGTGAGGAAGAAGAGGTGGATCAGGATGATGATGGTCGTAGCAGGCTCCATCACAACCTCGGAAGTGTATATATGGAGCTAAGAATGTGGGATCAGGCTAAGAAGCATGTTGAGAAGGATATTATAATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAACTGCATTACAGGGTTCAAAAGTATGATGAAGCAATTCATTGCTATCGAAAGGCTCTTCATCTAGCAAAATCAATGGAAGATGAGGATGCTTTGGCAAGGCAAATTGATCAGAATATCAATACTGTTAAAGAAGCTATGCAAGTGATGGTTGAACTAAGAAAAGAAGAGCAAAATCTTAAGAAGCTAATGAGAGAAATGGTCACTGCTAGAGGCACACCACGTGAGCGCAAATGTCTACTTCAGCAAAATGCTTCTCTTGATCGCTTAATTGAAAAATCAAGTACGATTTTTGCATGGATGCAGCATCTTGAATTTGCGAAAAGGAAAAAAAGAGTAGCAAGTGAACTTTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGGGAATCGTATCATAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATTGGTAATTTAGAGGGACAAGCACTAGCCAAGATTAATATTGGTGATGTTTACGACTGTGATGGTAAGTGGACAGAAGCACTAGATGCATTTGAGGAGAGTTACAGGATTGCTGTTGAGGCTAAACTTCCTTCTGTCCAGCTTTCAGCACTAGAGAATATGCATTATAGCCACATGATACGATTTGATAATGCAGAAGAAGCTAGGCGGTTACAGTGTCAAATTGACCAATTGAAGGAGAAAACTAAAAGTGGTAATGATACAAGGGCAGAGGATTGTTGCTCTGAAACTGATACAGAAGCAAACGATGCTCTATCAGACAGTTCATCTGATGAGTGCTCCTTGTCAGAAACTAGAAAATCTTGTAAAAGCAATTTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACGCAGTTACTTTTATTTCATCCTTCAAGCGGCATGAAAGGTCGCCTACAATCAAATCATTTGACATGGAAAAATGCAATGCTTCTTCTAACCCATCTGAATTTTCACCTAAAAGTTTGTCTAAGTCAGCTGGTAGCCAACAGACAACCATTGGTCGTAAACGCACTCGTGTGGTTCTTTCTGATGATGATGAAGACGAGGATGAAATGATGGATTTCTCAAAAACAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGACAACAAGAATAAACAATACTCAGGAAATCTTGCAGCTGAAGTTAAGGAGGGTTCAACAACAACCAGCAAACATGCAAGCAGGTCTTGCGAAGATATTGAAGAAAGCACTGGTTCTTATAAATATAAGAGTCGAATGATCAGGACTCAAAATGATAAAACTTTTGGAACTCCAAATGCTGATGAAATATTTCCTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCCGAAAATCTGTTGCATAGATATAAGGCCACCAAGTCGAAGCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAATTGATAATGAGCTAATACAAGTAGGTGTTGCCTTATTTAGCAACATGCTAAGCATTGAATCTGCAAAGGAAGAACTAGCATGCATGTACTATCTACAACTTCCCCTTGAAAAGAGATCGGAGGGTCTGTTACCTGTGATTCAACATATAAGTCATGATGGGAGAACGCTGGAGACCCTTGAATTTTCAAAAACCTTTGACCATGGGAGAAATCTTTTGTTTGAAGCTGTCATCAATGGATGGGTTTCAAAACCCTTGATAAAACTCTATATTGACTACTGCAAGGAGTTATCTGAGACACCTAACATGAAGCTGGTGAAGAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCAGTCTCTGATTGTGATCTGCAAGACTTATCTATCAGCCCACTGTTGAATGCGCTGCACACCCAGAAAACTTTTGCCATTTTAGACCTTTCTCACAATTTCTTAGGAAATGGAACGATGGAGAAAATTCAGCAGGTTTTCAAGCAGTCCAGCCAGACACATGACTTGACGTTAGATTTACACTGCAATCGGTTTGGTCCAACTGCTTTATACCAGATTTGTGAATGCCCTATTCTGTTCGCTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTTACTGATGCTTGCGGGTCATACCTGTCAACTATCTTAAAAAATTGTAAAGGTCTTTGGTGCTTGAATATTGAACGATGTTCCATCACATCTAGAACAATTCAAAAGGTTGCTGATGCACTGGAAGTTGGAGCATCACTGGAAAAACTCTATATAGGATACAACAACTCAATCTCAGGAAATGCCCTCAGTAGTTTATTTGTTAAGCTCACAGTACTGAATAGGTTCAATAGTCTTGGTCTATCTGGTTTGAAGTTGAGCAAGCCTGTTATGGAAGGCCTTCTCCAACTTGTTAAATCCTTGGGTTTGTCTGGATTAATGCTTGGGGGCACTGGCATTGGAGATGATGCTGCATTAGGGATAACTGAATCATTTAGTGGAAGTGAAGAGCTCGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAGTACCTTGTCAAATTTGGTGGTTGCATTTCTATTATACAGCGTGTTCATGAGCTGAACCTTTCTGGGAATGCCATCATGCAAGAGGGTTGTCATGCAGTATCATCACTAATTGCTAACCCTCTATGCGGCATCAAATTCTTGCTTCTCAACAAGTGTCAACTTGGCCTAACCGGAGTTGCTCAAATCATTCAAGCTATAGCAGGTAACCACTGTCTTGAAGAACTCAATCTCGCTGATAACATTGATCTTGATAAACATCCACTACAATGTAACATAATAGATAAAGAAAATAAAGAACTTGTACAACCGTGTCATGATATATCTAAGCCTCATGGCCTAACATGTTCAAGCAAGGAGTTTGATCTCGCTCAACAGAATTTAGAGGAGACAAACACTGAATACGATCAGCTTGAAGTTGCTGATAGTGAAGAGCCCATTAGAGAAGCTCCAGCATCCGGGATCGATGATAGTTGTGCAAGTTCATGTGAAAGAAAATCCACATCTTTTGATTGCCAGTTTATTTTATCACTTTCAACTGCAATTGGGATGGCAAAGACATTGCGATTACTGGATCTTAGCAACAATGGTTTTTCTTCCCAAGAGACTGAAACAATATTTGGTGCATGGTCAACTTCAAGAACTGACTTGGCCCAAAGACATATCAAGGACAACATAGTACATTTATACGTAAAGGGTACAAAGTGTTGTGTGAGACCCTGCTGCAAGAAGGATTAA 4032 39.98 MTRDGVQFDAAKRSYRNAKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKNANDLVEQQRANTQLGRTYHELFLKSDDDHLSVRNAKKYFRAAMELAKFLKDHPPKIGCSFLKEYVDAHNNLGMLEMDLDNLEEAKNILTEGLEICEEEEVDQDDDGRSRLHHNLGSVYMELRMWDQAKKHVEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKEAMQVMVELRKEEQNLKKLMREMVTARGTPRERKCLLQQNASLDRLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYHKLRKFTKSIKWYVKSWEVYKSIGNLEGQALAKINIGDVYDCDGKWTEALDAFEESYRIAVEAKLPSVQLSALENMHYSHMIRFDNAEEARRLQCQIDQLKEKTKSGNDTRAEDCCSETDTEANDALSDSSSDECSLSETRKSCKSNFNSSKSLADLEEPNDAVTFISSFKRHERSPTIKSFDMEKCNASSNPSEFSPKSLSKSAGSQQTTIGRKRTRVVLSDDDEDEDEMMDFSKTRPHLCRGENSATSDDNKNKQYSGNLAAEVKEGSTTTSKHASRSCEDIEESTGSYKYKSRMIRTQNDKTFGTPNADEIFPSDSAASGSKFEVDISENLLHRYKATKSKPSEQGECVTFKIDNELIQVGVALFSNMLSIESAKEELACMYYLQLPLEKRSEGLLPVIQHISHDGRTLETLEFSKTFDHGRNLLFEAVINGWVSKPLIKLYIDYCKELSETPNMKLVKKLYNLEASDDEIAVSDCDLQDLSISPLLNALHTQKTFAILDLSHNFLGNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALYQICECPILFARLEVLNISGNRLTDACGSYLSTILKNCKGLWCLNIERCSITSRTIQKVADALEVGASLEKLYIGYNNSISGNALSSLFVKLTVLNRFNSLGLSGLKLSKPVMEGLLQLVKSLGLSGLMLGGTGIGDDAALGITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRVHELNLSGNAIMQEGCHAVSSLIANPLCGIKFLLLNKCQLGLTGVAQIIQAIAGNHCLEELNLADNIDLDKHPLQCNIIDKENKELVQPCHDISKPHGLTCSSKEFDLAQQNLEETNTEYDQLEVADSEEPIREAPASGIDDSCASSCERKSTSFDCQFILSLSTAIGMAKTLRLLDLSNNGFSSQETETIFGAWSTSRTDLAQRHIKDNIVHLYVKGTKCCVRPCCKKD* 1344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24398015 24411869 - CsaV3_6G041830.1 Csa06g02797 534424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02797 1343 SUPERFAMILY RNI-like 829 1183 - -
Csa06g02797 1343 Coils Coil 164 198 - -
Csa06g02797 1343 MobiDBLite consensus disorder prediction 573 605 - -
Csa06g02797 1343 SMART LRR_RI_2 885 912 - -
Csa06g02797 1343 SMART LRR_RI_2 1140 1167 - -
Csa06g02797 1343 SMART LRR_RI_2 943 970 - -
Csa06g02797 1343 SMART LRR_RI_2 1111 1138 - -
Csa06g02797 1343 Pfam Tetratricopeptide repeat 381 449 - -
Csa06g02797 1343 Pfam Tetratricopeptide repeat 208 279 - -
Csa06g02797 1343 Gene3D Tetratricopeptide repeat domain 6 317 IPR011990 GO:0005515
Csa06g02797 1343 Gene3D Tetratricopeptide repeat domain 330 503 IPR011990 GO:0005515
Csa06g02797 1343 Coils Coil 298 328 - -
Csa06g02797 1343 Gene3D Ribonuclease Inhibitor 837 1335 IPR032675 -
Csa06g02797 1343 PANTHER PROTEIN TONSOKU 1 1343 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Csa06g02797 1343 SUPERFAMILY TPR-like 15 121 IPR011990 GO:0005515
Csa06g02797 1343 MobiDBLite consensus disorder prediction 573 621 - -
Csa06g02797 1343 Pfam Tetratricopeptide repeat 166 196 IPR019734 GO:0005515
Csa06g02797 1343 MobiDBLite consensus disorder prediction 653 674 - -
Csa06g02797 1343 SUPERFAMILY HCP-like 245 448 - -
Csa06g02797 1343 SMART tpr_5 248 281 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 165 198 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 208 241 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 28 61 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 68 101 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 379 412 IPR019734 GO:0005515
Csa06g02797 1343 SMART tpr_5 419 452 IPR019734 GO:0005515
Csa06g02797 1343 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Csa06g02797 1343 SUPERFAMILY TPR-like 160 285 IPR011990 GO:0005515
Csa06g02797 1343 Coils Coil 1219 1239 - -
Csa06g02797 1343 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02797 - - - csv:101207276 2635.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31