Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02809 ATGGGTTCAAAAAAACCCTATTTTCTAGCAATAACAACACAAGTATTTCTTGCTGGAATGAGTCTTCTTTCTAAAGCAGCTTTTGCTTCGGGAATGAATACCTTTGTGTTTGTGTTCTATAGACAAGCTGCTGGAGCTCTTTTTTTTCTTCCTCTTATGTTTTTTTTAAAAAGAAAAGAAAGCCGATCGCTTTCACTTAAAGACTTCCTGAAGATTTTCATGATTTCGTTAATAGGGATGACTATTGGATTTAATGCATATGGTGTTGCTGTTGATTATACCTCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTCGCTGTTTTATTGAGGATGGAGAAAGTAAATTTAAGAAAAGTGGCAGGAATTGCAAAAGCTTTGGGAATATTAATATGCATTGGAGGAGTGATAACACTTGCATTCTACAAAGGTCCATATTTGAAGCCACTCATCAACCATCATCTTTTGAAATTTCACAAATCATCACATAATATTCCCCATTCGTCCTCTTCTAAAACTTGGATTATTGGCTGTTTCCTTCTCTTCATCTCCAGCATCTCTTGGGGTTTGTGGTTTGTTCTTCAGGCTTATTTTCTCAAGACATATCCATCACCATTGGAGTTTATAAGTTACCAAACATTATTAAGCGCAGCCCAATCTTTTGTGATTGCAATTGCAATGGAAAGAGACCCTTCTGAGTGGAAATTGGGTTGGAACATTAGGCTTCTTGCTGTCGTTTATTGTGGAGTTCTTGTAACAGTTGTTTCAAATTTCTTGCAATGTTGGGTAATAAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACACCATTGAATGTCATTGCCACTATTATTGGCTCTGAATTGCTTTTGGGTGAAGGAATCAACTTGGGAAGTCTTATTGGTGCAATTTTGTTGGTGATAAGTCTTTACAGTGTATTATGGGGGAAAAACAAAGAACTCGACGTGGCTGATCCAGATAGTAACAATCAAACAAATGTATTTGTTTCACCTCAATTACCAAAAGATTTGTCAGAGATGAGACCAATAGCTGAACCATAG 1083 37.12 MGSKKPYFLAITTQVFLAGMSLLSKAAFASGMNTFVFVFYRQAAGALFFLPLMFFLKRKESRSLSLKDFLKIFMISLIGMTIGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRKVAGIAKALGILICIGGVITLAFYKGPYLKPLINHHLLKFHKSSHNIPHSSSSKTWIIGCFLLFISSISWGLWFVLQAYFLKTYPSPLEFISYQTLLSAAQSFVIAIAMERDPSEWKLGWNIRLLAVVYCGVLVTVVSNFLQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVISLYSVLWGKNKELDVADPDSNNQTNVFVSPQLPKDLSEMRPIAEP* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24496090 24500590 - CsaV3_6G041950.1 Csa06g02809 534436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02809 360 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020|GO:0016021
Csa06g02809 360 Pfam EamA-like transporter family 5 135 IPR000620 GO:0016020|GO:0016021
Csa06g02809 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 148 - -
Csa06g02809 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 326 - -
Csa06g02809 360 PANTHER WAT1-RELATED PROTEIN 5 337 - -
Csa06g02809 360 PANTHER WAT1-RELATED PROTEIN 5 337 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01587 Csa-Chr2:15034798 Csa06g02809 Csa-Chr6:24496090 3.11E-114 dispersed
Csa02g01588 Csa-Chr2:15044269 Csa06g02809 Csa-Chr6:24496090 3.63E-70 dispersed
Csa06g02805 Csa-Chr6:24461196 Csa06g02809 Csa-Chr6:24496090 1.80E-131 dispersed
Csa06g02806 Csa-Chr6:24467078 Csa06g02809 Csa-Chr6:24496090 5.30E-102 dispersed
Csa06g02807 Csa-Chr6:24474316 Csa06g02809 Csa-Chr6:24496090 1.26E-115 dispersed
Csa06g02809 Csa-Chr6:24496090 Csa06g02812 Csa-Chr6:24539677 1.46E-159 dispersed
Csa06g02809 Csa-Chr6:24496090 Csa06g02810 Csa-Chr6:24507300 1.29E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02809 - - csv:101219744 709.138