Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02812 ATGGATTCCAAGAAGCCTTACCTTGTTGCAATTTTCATTCAAATTACTTTTGCTGGAATGAGCTTATTGTCCAAGGCTGCCTTCGCTACCGGTATGAATACGTATATCTTCCTCTTCTATCGTCAAGCTGCTGGCAGTCTCATCCTAATCCCACTAACTTTACTCTTAAAAGGGAAGGAGAAGAGGCCATTGTCCTTCAAACAGCTCTGCCAATGTTTTTTCATTTCATTGATAGGGATAACTCTTGCAATGAATGCTTATGGAGTGGCCGTTGATTACACATCAGCAACTCTTGGAGCTGCAGCTTTCAACTGTCTTCCTGTCTCAACGTTCATCTTCGCCGTCTTATTTAGAATGGAGAGAGTGAACTTAAAGAAAGCAGCTGGGATAGCAAAGGTGGGAGGAATGATGATATGTGTGGGAGGGGCAGCAATACTTGCCTTCTACAAAGGACCATATCTAAAGCCAATAATATCACACCCGATTTTTCACATTGAGGAATCTGAAACCGACATTACTACAACATCTCAAAAGTCATGGTTGCTGGGGTGCTTCTTTCTGCTAGTGGCTACTGTGGGTTGGGGGATTTGGTTCGTGTTTCAGGCTAAGTTCTTGAAGGGTTACCCTCACCCAGTTGAATTCATGTGCGCTCAAACAGTGATGAGTGTAGTTCAGTGCTTTGTTGTGGCTATTATTGTGGAAAGAGATCCTTCAGAATGGAAATTGGGTTGGAATGTTAGACTCTATGCTGTTCTCTATTGTGGTATTTTGGTGATTGGAATTGCAAACAATGCACAATGTTGGGTAATCAAAGAAAAGGGTCCAGTTTTCCAAGCCATGATGATGCCCTTGAATTTAGTCGCAACCATCATCGGTTCTCAACTATTTTTGGCCGAAGGAATTTACTTGGGAAGTGTGATCGGTGCAATTTTGCTAGTAACAAGTCTTTACAGTGTTTTATGGGGAAAAAACAAAGAGCTTGTGGTTACTCCAACTAACCAAGAACGACCATCGTCTCCAGATTCTCTACCACAAAAAGAGTCTGAAGAGCCGGCCAATCGTTCTCAAGTTGACTCCACGATAGTCTAA 1089 42.42 MDSKKPYLVAIFIQITFAGMSLLSKAAFATGMNTYIFLFYRQAAGSLILIPLTLLLKGKEKRPLSFKQLCQCFFISLIGITLAMNAYGVAVDYTSATLGAAAFNCLPVSTFIFAVLFRMERVNLKKAAGIAKVGGMMICVGGAAILAFYKGPYLKPIISHPIFHIEESETDITTTSQKSWLLGCFFLLVATVGWGIWFVFQAKFLKGYPHPVEFMCAQTVMSVVQCFVVAIIVERDPSEWKLGWNVRLYAVLYCGILVIGIANNAQCWVIKEKGPVFQAMMMPLNLVATIIGSQLFLAEGIYLGSVIGAILLVTSLYSVLWGKNKELVVTPTNQERPSSPDSLPQKESEEPANRSQVDSTIV* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24539677 24542137 - CsaV3_6G041980.1 Csa06g02812 534439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02812 362 PANTHER WAT1-RELATED PROTEIN 5 336 - -
Csa06g02812 362 PANTHER WAT1-RELATED PROTEIN 5 336 IPR030184 GO:0016021|GO:0022857
Csa06g02812 362 MobiDBLite consensus disorder prediction 331 362 - -
Csa06g02812 362 MobiDBLite consensus disorder prediction 331 346 - -
Csa06g02812 362 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020|GO:0016021
Csa06g02812 362 Pfam EamA-like transporter family 5 131 IPR000620 GO:0016020|GO:0016021
Csa06g02812 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02812 - - - csv:101208318 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02809 Csa-Chr6:24496090 Csa06g02812 Csa-Chr6:24539677 1.46E-159 dispersed
Csa06g02810 Csa-Chr6:24507300 Csa06g02812 Csa-Chr6:24539677 0 dispersed
Csa06g02812 Csa-Chr6:24539677 Csa04g01808 Csa-Chr4:17728900 3.24E-71 dispersed
Csa06g02811 Csa-Chr6:24526657 Csa06g02812 Csa-Chr6:24539677 1.35E-159 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1215 . . Bda04g00343 Bda10g00347 . . . Bma15g00824 Cmo02g00591 Cmo20g01088 Cma03g01072 Cma07g00780 Car03g00965 Car07g00768 . . . Bhi03g01397 . . . Hepe04g1135 . . Cla01g01537 Cam01g1607 Cec04g1254 Cco04g1326 Clacu01g1634 Cmu01g1521 Cre04g1199 . . . . Lsi01g01125 . . Cme08g01047 . . . . . Bpe06g00281 . . . Cmo03g01066 Cmo07g00804 . Cma20g01077 . . . . Bhi10g02345 Tan07g0901 . . . . . Cla02g00077 Cam02g0079 Cec02g0082 Cco02g0073 Clacu02g0077 Cmu02g0076 Cre02g0416 Lsi10g00702 Csa06g02812 Chy02g01022 Cme11g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244