Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02816 | ATGGACACCGCTGGTAGACTCATTGCTGGGTCTCATAATAGAAATGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGTCTGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAAGTAGAGTTAACTGCCGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTATGAGTACGAGAGAAGAGAGGGAAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGACGAGGATGAAGATGATATTGATGATTTGGACAATGAGTTCGATTATGGAAACCTCGATGATTTTGGCCCTCGCCATGCTGCTGAAGGATCATATGGATCGCACCTTAACTCTGGCCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCATGAACCTTCTCCTCTTGGTTCTGAGATTCCCCTCCTGACATATGGTGAGGAGGATTATGAAATTTCTGCCGATCAACATGCCCTTGTACCCCATTTTATGGGTAATGGAAATCGAGTCCATCCAATGCCTTCTCCTGATCGATCAAGTCCTTCACAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTAGTGAAACACCCAGGGGTTGATGATGGGAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAGCCTCTATCAAGGAAATTGCCCATCTCTTCAAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTCGGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTGAAGATGCCTATGGCCTGTGGCTGACTTCAGTAATATGTGAAATATGGTTTGCTGTATCGTGGATTCTTGATCAGTTCCCAAAATGGTATCCAATTGAAAGAGAAACTTATCTTGATCGGCTTTCACTAAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGATATATTTGTTAGTACTGTCGATCCAACGAAAGAACCTCCTTTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAAAAATTCAATATTGAGCCTCGTGCCCCAGAGTTTTATTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTGAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCGTGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTTTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCTGGTGCCATGAATTCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGAAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGGTTTGATGGGATCGATCGACATGATAGATATTCAAACCGGAACGTAGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCAATATATGTTGGTACAGGATGTGTTTTCCGTAGGGTTGCCCTCTATGGATATGATGCTCCTTCCAAGAAAAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAATAATTCAAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATCGAAGACCTAAGTATAGAGAAATTAAATGCGTCTGAAATAAAATTGGCAAAAAAGTTCGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGTGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTATTGTATTCCCAAGAGACCCGCATTTAAAGGATCGGCTCCAATCAATCTCTCAGATCGTCTACACCAAGTTTTACGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGTGGGTTGAAATGTCTGGAACGATTTTCATACATAAACTCAGTGGTCTACCCGTGGACCTCAATCCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCCGAGATTAGCAATTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATTCTTGAGATGCAGTGGGGTGGTGTCGGGATTGACGACTGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTTTCGTCACATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTCTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTATTGATCATAAACATTGTTGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTATGACTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGTTTGTTAGGGAAACAGGACCGGTTACCAACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGAATCAACCCATTTGTATCCAAAGACGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGACTAA | 3273 | 42.96 | MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDDFGPRHAAEGSYGSHLNSGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISADQHALVPHFMGNGNRVHPMPSPDRSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVEDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNSKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKCLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD* | 1091 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24583973 | 24591181 | + | CsaV3_6G042020.1 | Csa06g02816 | 534443 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02816 | 1090 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 373 | 907 | IPR029044 | - | |
Csa06g02816 | 1090 | MobiDBLite | consensus disorder prediction | 682 | 702 | - | - | |
Csa06g02816 | 1090 | MobiDBLite | consensus disorder prediction | 134 | 151 | - | - | |
Csa06g02816 | 1090 | MobiDBLite | consensus disorder prediction | 685 | 700 | - | - | |
Csa06g02816 | 1090 | Pfam | Cellulose synthase | 364 | 1078 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Csa06g02816 | 1090 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 517 | 656 | IPR029044 | - | |
Csa06g02816 | 1090 | CDD | mRING-HC-C4C4_CesA_plant | 37 | 87 | - | - | |
Csa06g02816 | 1090 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Csa06g02816 | 1090 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
Csa06g02816 | 1090 | SUPERFAMILY | RING/U-box | 25 | 111 | - | - | |
Csa06g02816 | 1090 | MobiDBLite | consensus disorder prediction | 100 | 115 | - | - | |
Csa06g02816 | 1090 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
Csa06g02816 | 1090 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 1 | 1089 | - | - | |
Csa06g02816 | 1090 | MobiDBLite | consensus disorder prediction | 93 | 163 | - | - | |
Csa06g02816 | 1090 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 1089 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00256 | Csa-Chr6:1749753 | Csa06g02816 | Csa-Chr6:24583973 | 0 | dispersed | |
Csa06g02816 | Csa-Chr6:24583973 | Csa07g02016 | Csa-Chr7:19667913 | 0 | dispersed | |
Csa07g01068 | Csa-Chr7:10241751 | Csa06g02816 | Csa-Chr6:24583973 | 2.87E-126 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02816 | K10999 | - | csv:101211094 | 2192.16 |