Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02816 ATGGACACCGCTGGTAGACTCATTGCTGGGTCTCATAATAGAAATGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGTCTGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAAGTAGAGTTAACTGCCGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTATGAGTACGAGAGAAGAGAGGGAAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGACGAGGATGAAGATGATATTGATGATTTGGACAATGAGTTCGATTATGGAAACCTCGATGATTTTGGCCCTCGCCATGCTGCTGAAGGATCATATGGATCGCACCTTAACTCTGGCCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCATGAACCTTCTCCTCTTGGTTCTGAGATTCCCCTCCTGACATATGGTGAGGAGGATTATGAAATTTCTGCCGATCAACATGCCCTTGTACCCCATTTTATGGGTAATGGAAATCGAGTCCATCCAATGCCTTCTCCTGATCGATCAAGTCCTTCACAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTAGTGAAACACCCAGGGGTTGATGATGGGAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAGCCTCTATCAAGGAAATTGCCCATCTCTTCAAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTCGGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTGAAGATGCCTATGGCCTGTGGCTGACTTCAGTAATATGTGAAATATGGTTTGCTGTATCGTGGATTCTTGATCAGTTCCCAAAATGGTATCCAATTGAAAGAGAAACTTATCTTGATCGGCTTTCACTAAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGATATATTTGTTAGTACTGTCGATCCAACGAAAGAACCTCCTTTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAAAAATTCAATATTGAGCCTCGTGCCCCAGAGTTTTATTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGGTGAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCGTGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTTTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCTGGTGCCATGAATTCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGAAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGGTTTGATGGGATCGATCGACATGATAGATATTCAAACCGGAACGTAGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCAATATATGTTGGTACAGGATGTGTTTTCCGTAGGGTTGCCCTCTATGGATATGATGCTCCTTCCAAGAAAAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAATAATTCAAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGAATCGAAGACCTAAGTATAGAGAAATTAAATGCGTCTGAAATAAAATTGGCAAAAAAGTTCGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGTGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTATTGTATTCCCAAGAGACCCGCATTTAAAGGATCGGCTCCAATCAATCTCTCAGATCGTCTACACCAAGTTTTACGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGTGGGTTGAAATGTCTGGAACGATTTTCATACATAAACTCAGTGGTCTACCCGTGGACCTCAATCCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCCGAGATTAGCAATTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATTCTTGAGATGCAGTGGGGTGGTGTCGGGATTGACGACTGGTGGAGAAACGAACAATTCTGGGTTATTGGAGGTGTTTCGTCACATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTCTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTATTGATCATAAACATTGTTGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTATGACTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGTTTGTTAGGGAAACAGGACCGGTTACCAACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGAATCAACCCATTTGTATCCAAAGACGGTCCTGTTTTAGAAGTTTGCGGGTTGAATTGCGACTAA 3273 42.96 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDDFGPRHAAEGSYGSHLNSGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISADQHALVPHFMGNGNRVHPMPSPDRSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGVDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVEDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNSKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKCLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD* 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24583973 24591181 + CsaV3_6G042020.1 Csa06g02816 534443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02816 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 907 IPR029044 -
Csa06g02816 1090 MobiDBLite consensus disorder prediction 682 702 - -
Csa06g02816 1090 MobiDBLite consensus disorder prediction 134 151 - -
Csa06g02816 1090 MobiDBLite consensus disorder prediction 685 700 - -
Csa06g02816 1090 Pfam Cellulose synthase 364 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa06g02816 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 517 656 IPR029044 -
Csa06g02816 1090 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Csa06g02816 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Csa06g02816 1090 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Csa06g02816 1090 SUPERFAMILY RING/U-box 25 111 - -
Csa06g02816 1090 MobiDBLite consensus disorder prediction 100 115 - -
Csa06g02816 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Csa06g02816 1090 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1089 - -
Csa06g02816 1090 MobiDBLite consensus disorder prediction 93 163 - -
Csa06g02816 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1089 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00256 Csa-Chr6:1749753 Csa06g02816 Csa-Chr6:24583973 0 dispersed
Csa06g02816 Csa-Chr6:24583973 Csa07g02016 Csa-Chr7:19667913 0 dispersed
Csa07g01068 Csa-Chr7:10241751 Csa06g02816 Csa-Chr6:24583973 2.87E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02816 K10999 - csv:101211094 2192.16