Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02833 ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTAACCTTCTTTTTCTTCTTTGTCTCTCTTACTTTTCTTTCCTTCTCTGTTTCCTCTGTAACTCCTTCTTCTTCTCATGGTGATACCCAGAAGTTGGTTTCTTTTAAAGCTTCACTTCCGAATCCAACCCTTCTTCAGAACTGGCTTTCCAATGCTGACCCATGCTCGTTTTCTGGTATTACTTGTAAGGAAACTAGAGTCTCTGCTATAGACTTGAGTTTCTTGTCTTTGAGCTCTAATTTCAGTCATGTGTTTCCTTTGCTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTTAAATCTACTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTTAAGTGTAGTCCTCTGCTTGCTTCTGTAGATCTGTCTCTTAATGGCTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCTCCAATGTTAAGTCGCTTAATCTGTCCTTTAACGCCTTTGATTTTCCTCTTAAAGACTCTGCTCCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAACCGGATTGTCGGGTCTAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAGTTTGCAGCACTTGGCATTGAAAGGAAACAAAATCAGCGGAGAGATTAATCTGTCGTCTTGTAATAAACTCGAGCATTTGGATATCTCTGGCAATAATTTCTCTGTGGGTATTCCGTCGTTGGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTTACCGGCGACGTTGGACATGCTCTGTCTTCTTGTCAGCAACTCACCTTTCTGAATCTCTCCAGCAACCAATTTGGAGGTCCAATCCCTTCATTTGCATCTTCAAACTTGTGGTTTCTTTCGCTTGCTAACAACGATTTCCAGGGGGAGATTCCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTCTTATTGGAGCTGTACCTACTGCTTTGGGGTCTTGTTTTTCGTTGCAAACTTTAGACATTTCGAAAAATAATCTCACTGGTGAGCTCCCCATTGCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAACAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAACTCGCCATTTTGAATTCTTTGGATCTGAGTTCCAATAACTTTTCTGGGTCGATTCCGGCGGGACTTTGCGAAGACCCAAGCAACAATTTGAAAGAACTATTTCTTCAGAACAATTGGCTAACAGGTCGAATCCCGGCGAGTATTAGTAATTGTACACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAAGGGGAGATTCCATCCGATTTTAGCAACTTTCAAGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACTGGGACCATCCCGTCCGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCATTGTCAAACAACCGGTTGAAAGGAGAGATTCCCGCTTGGATTGGGAGCTTACCGAACCTTGCCATCCTTAAGCTCAGCAACAACTCGTTCTACGGTAGGATTCCTAAGGAGCTCGGCGATTGTCGGAGCTTGATCTGGCTTGACTTGAATACCAATCTGTTGAATGGAACGATCCCTCCGGAGCTGTTTCGTCAATCTGGTAACATTGCTGTTAACTTTATCACGGGGAAATCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGTCATGGAGCTGGAAATTTGCTTGAGTTCGCTGGAATAAGACAGGAACAAGTGAATAGAATTTCAAGTAAGAGTCCTTGCAATTTCACAAGGGTTTATAAGGGAATGATTCAGCCCACTTTTAATCATAATGGTTCCATGATCTTTCTTGATCTTTCCCACAATATGTTGACTGGTAGTATTCCTAAGGACATTGGTTCCACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTTTCGGGACCGATTCCACAGGAGCTCGGCGACTTGACGAAACTTAACATTCTTGATCTGTCTGGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCTATACCCGAGTCAGCTCAGTTCGAAACATTCCCCGCATCAGGTTTTGCTAATAATTCTGGCCTTTGTGGGTATCCTCTTCCTCCATGTGTTGTTGATTCAGCAGGAAATGCAAATTCTCAGCATCAAAGATCTCATCGGAAACAGGCATCCCTTGCTGGGAGTGTTGCAATGGGGTTACTCTTCTCTCTTTTCTGTATTTTTGGTCTGATTATCGTTGTTATCGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTGCACTCGATTCTTATGTTGAGAGTCATTCTCAATCAGGCACGACCACAGCCGTTAACTGGAAATTAACTGGTGCCCGTGAAGCATTGAGCATCAATCTTGCAACATTTGAGAAGCCACTACGTAAGCTTACATTTGCTGATCTTCTTGAGGCTACAAATGGGTTCCACAACGATAGTTTGATTGGTTCAGGGGGTTTCGGCGACGTGTATAAGGCTCAATTGAAGGATGGAAGCACAGTAGCCATCAAGAAGCTGATTCATGTTAGTGGGCAGGGTGATAGAGAATTCACTGCAGAAATGGAAACCATTGGTAAAATCAAACACCGAAACCTAGTACCGCTTTTAGGCTACTGCAAAGTCGGAGAAGAACGGCTTCTGGTGTACGAGTATATGAAATATGGAAGCCTGGAAGATGTTTTACATGACCAGAAGAAGGGCGGGATCAAATTGAATTGGTCAGCAAGAAGAAAAATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTTTTATTGGATGAGAATTTGGAAGCCAGAGTATCAGATTTTGGAATGGCAAGACTGATGAGTGCCATGGACACTCATTTGAGTGTCAGCACATTAGCTGGAACACCCGGTTATGTCCCTCCCGAATATTACCAAAGCTTCCGGTGTTCAACAAAAGGCGACGTTTACAGTTACGGTGTCGTCATGCTCGAGCTCTTAACAGGTAAACGACCTACAGACTCAGCAGATTTCGGGGACAATAATCTCGTTGGATGGGTAAAACAACACGTCAAGTTGGACCCGATCGATGTTTTTGATCCCGAACTCATAAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAAGTAGCTGTTGCTTGTTTAGACGATAGGTCATGGCGGCGACCAACAATGATCCAGGTAATGACGATGTTCAAGGAAATCCAAGCAGGGTCAGGGATGGATTCACACTCTACAATCGGAACCGACAATGGAGGATTCAGTGTCGACATGGTAGATATGAGCCTAAAGGAAGTACCAGAACCAGAAGGGAAGTAA 3597 43.09 MIPFFPSSSNSFLTFFFFFVSLTFLSFSVSSVTPSSSHGDTQKLVSFKASLPNPTLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLASVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNAFDFPLKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSGGCGSLQHLALKGNKISGEINLSSCNKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFGGPIPSFASSNLWFLSLANNDFQGEIPVSIADLCSSLVELDLSSNSLIGAVPTALGSCFSLQTLDISKNNLTGELPIAVFAKMSSLKKLSVSDNKFFGVLSDSLSQLAILNSLDLSSNNFSGSIPAGLCEDPSNNLKELFLQNNWLTGRIPASISNCTQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLKGEIPAWIGSLPNLAILKLSNNSFYGRIPKELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMIQPTFNHNGSMIFLDLSHNMLTGSIPKDIGSTNYLYILDLGHNSLSGPIPQELGDLTKLNILDLSGNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAGNANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSALDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSTVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWSARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHVKLDPIDVFDPELIKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSHSTIGTDNGGFSVDMVDMSLKEVPEPEGK* 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24710337 24714736 + CsaV3_6G042190.1 Csa06g02833 534460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02833 1198 Pfam Brassinosteroid receptor island domain 592 656 IPR045381 -
Csa06g02833 1198 Gene3D Ribonuclease Inhibitor 44 775 IPR032675 -
Csa06g02833 1198 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 1173 - -
Csa06g02833 1198 SUPERFAMILY RNI-like 61 294 - -
Csa06g02833 1198 ProSiteProfiles Protein kinase domain profile. 886 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02833 1198 SUPERFAMILY L domain-like 650 771 - -
Csa06g02833 1198 SMART LRR_typ_2 706 729 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 494 518 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 396 420 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 372 395 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 567 590 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 323 347 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 542 566 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 183 205 IPR003591 -
Csa06g02833 1198 SMART LRR_typ_2 730 753 IPR003591 -
Csa06g02833 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1008 1020 IPR008271 GO:0004672|GO:0006468
Csa06g02833 1198 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Csa06g02833 1198 Pfam Protein kinase domain 886 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02833 1198 Pfam Leucine rich repeat 496 554 IPR001611 GO:0005515
Csa06g02833 1198 Pfam Leucine rich repeat 685 743 IPR001611 GO:0005515
Csa06g02833 1198 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Csa06g02833 1198 Gene3D Transferase(Phosphotransferase) domain 1 962 1163 - -
Csa06g02833 1198 SMART serkin_6 886 1158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02833 1198 CDD STKc_IRAK 892 1161 - -
Csa06g02833 1198 SUPERFAMILY RNI-like 272 586 - -
Csa06g02833 1198 PRINTS Leucine-rich repeat signature 350 363 - -
Csa06g02833 1198 PRINTS Leucine-rich repeat signature 706 719 - -
Csa06g02833 1198 SUPERFAMILY Protein kinase-like (PK-like) 872 1162 IPR011009 -
Csa06g02833 1198 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Csa06g02833 1198 Pfam Leucine Rich Repeat 231 248 IPR001611 GO:0005515
Csa06g02833 1198 Pfam Leucine Rich Repeat 424 446 IPR001611 GO:0005515
Csa06g02833 1198 PANTHER SYSTEMIN RECEPTOR SR160 14 1173 - -
Csa06g02833 1198 Gene3D - 597 657 - -
Csa06g02833 1198 ProSitePatterns Protein kinases ATP-binding region signature. 892 915 IPR017441 GO:0005524
Csa06g02833 1198 Gene3D Phosphorylase Kinase; domain 1 847 961 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00264 Csa-Chr1:1653204 Csa06g02833 Csa-Chr6:24710337 4.59E-152 dispersed
Csa05g01293 Csa-Chr5:13737132 Csa06g02833 Csa-Chr6:24710337 4.61E-07 dispersed
Csa06g02833 Csa-Chr6:24710337 Csa07g02075 Csa-Chr7:20035071 1.88E-37 dispersed
Csa07g01618 Csa-Chr7:16693156 Csa06g02833 Csa-Chr6:24710337 1.85E-06 dispersed
Csa06g02833 Csa-Chr6:24710337 Csa03g01130 Csa-Chr3:8912410 1.96E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78407 PF00069 Pkinase 7.40E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02833 K13415 - csv:101209118 2299.63