Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02834 | ATGGGGTCATCGGCGTCGGAAGAAGAGATGATGGTGAGACTATTAAAAGGAGGAGATCAAGTGGCGGCCGCCGTGAACGCCGCCGCAATAACCACCAATTTGATTTGTTTGCCTGAAAACAACAACAAGAACAATATTATTAGTGTTGTTCAACAATCCTTAAAACCCCTTTTCTTCACTACTACTCACCACCACCACCAACAACAAGAACAACAATCCCTTTTCCCTTTTTGCTTTCCCTCAACCACCACTACCTCCCATCTCCTCCCATCCTCTCCTTCATCTCTCTGGGATGAGAGGGGGGTGAGCTTTATGAGAGGGAGAAATGCGATTGGAAATTATGGCGGCGAGGATGATCACAACAACGAAAATGACGGGAAGCCTCGGTTGAGGGTGTCAACGATGAAGATGAAAAGGATAAAAGGTAGGAAGAAAGTGAGAGAGCCAAGGTTCAGCTTTAAAACGATGACGGACGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTATGGCCAAAAGGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAAAAGAGAGTAGAAAGGTTAGCGGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCGCCTTCGGATCATAATTTAGAAGATTCTTTCATGGGTCACTTACCTTCTTCCCACCTCACCAATTTCTTCTGCTAG | 735 | 44.49 | MGSSASEEEMMVRLLKGGDQVAAAVNAAAITTNLICLPENNNKNNIISVVQQSLKPLFFTTTHHHHQQQEQQSLFPFCFPSTTTTSHLLPSSPSSLWDERGVSFMRGRNAIGNYGGEDDHNNENDGKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSFMGHLPSSHLTNFFC* | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24728797 | 24731520 | - | CsaV3_6G042200.1 | Csa06g02834 | 534461 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02834 | 244 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 43 | 227 | IPR044810 | GO:0003700 | |
Csa06g02834 | 244 | ProSiteProfiles | WRKY domain profile. | 157 | 222 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g02834 | 244 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 43 | 227 | - | - | |
Csa06g02834 | 244 | SMART | WRKY_cls | 162 | 221 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g02834 | 244 | Pfam | WRKY DNA -binding domain | 163 | 219 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g02834 | 244 | Gene3D | WRKY domain | 137 | 222 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa06g02834 | 244 | SUPERFAMILY | WRKY DNA-binding domain | 154 | 221 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01560 | Csa06g02834 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00716 | Csa-Chr3:6430612 | Csa06g02834 | Csa-Chr6:24728797 | 6.22E-45 | dispersed | |
Csa06g02834 | Csa-Chr6:24728797 | Csa06g01861 | Csa-Chr6:16783402 | 2.52E-32 | dispersed | |
Csa02g01560 | Csa-Chr2:14764150 | Csa06g02834 | Csa-Chr6:24728797 | 2.24E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32108 | PF03106 | WRKY | 4.40E-25 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02834 | - | - | csv:101208878 | 463.766 |