Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02834 ATGGGGTCATCGGCGTCGGAAGAAGAGATGATGGTGAGACTATTAAAAGGAGGAGATCAAGTGGCGGCCGCCGTGAACGCCGCCGCAATAACCACCAATTTGATTTGTTTGCCTGAAAACAACAACAAGAACAATATTATTAGTGTTGTTCAACAATCCTTAAAACCCCTTTTCTTCACTACTACTCACCACCACCACCAACAACAAGAACAACAATCCCTTTTCCCTTTTTGCTTTCCCTCAACCACCACTACCTCCCATCTCCTCCCATCCTCTCCTTCATCTCTCTGGGATGAGAGGGGGGTGAGCTTTATGAGAGGGAGAAATGCGATTGGAAATTATGGCGGCGAGGATGATCACAACAACGAAAATGACGGGAAGCCTCGGTTGAGGGTGTCAACGATGAAGATGAAAAGGATAAAAGGTAGGAAGAAAGTGAGAGAGCCAAGGTTCAGCTTTAAAACGATGACGGACGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTATGGCCAAAAGGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAAAAGAGAGTAGAAAGGTTAGCGGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCGCCTTCGGATCATAATTTAGAAGATTCTTTCATGGGTCACTTACCTTCTTCCCACCTCACCAATTTCTTCTGCTAG 735 44.49 MGSSASEEEMMVRLLKGGDQVAAAVNAAAITTNLICLPENNNKNNIISVVQQSLKPLFFTTTHHHHQQQEQQSLFPFCFPSTTTTSHLLPSSPSSLWDERGVSFMRGRNAIGNYGGEDDHNNENDGKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSFMGHLPSSHLTNFFC* 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 24728797 24731520 - CsaV3_6G042200.1 Csa06g02834 534461
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02834 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 43 227 IPR044810 GO:0003700
Csa06g02834 244 ProSiteProfiles WRKY domain profile. 157 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02834 244 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 43 227 - -
Csa06g02834 244 SMART WRKY_cls 162 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02834 244 Pfam WRKY DNA -binding domain 163 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02834 244 Gene3D WRKY domain 137 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g02834 244 SUPERFAMILY WRKY DNA-binding domain 154 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa02g01560 Csa06g02834 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00716 Csa-Chr3:6430612 Csa06g02834 Csa-Chr6:24728797 6.22E-45 dispersed
Csa06g02834 Csa-Chr6:24728797 Csa06g01861 Csa-Chr6:16783402 2.52E-32 dispersed
Csa02g01560 Csa-Chr2:14764150 Csa06g02834 Csa-Chr6:24728797 2.24E-60 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32108 PF03106 WRKY 4.40E-25 CL0274 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02834 - - csv:101208878 463.766