Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa06g02834	ATGGGGTCATCGGCGTCGGAAGAAGAGATGATGGTGAGACTATTAAAAGGAGGAGATCAAGTGGCGGCCGCCGTGAACGCCGCCGCAATAACCACCAATTTGATTTGTTTGCCTGAAAACAACAACAAGAACAATATTATTAGTGTTGTTCAACAATCCTTAAAACCCCTTTTCTTCACTACTACTCACCACCACCACCAACAACAAGAACAACAATCCCTTTTCCCTTTTTGCTTTCCCTCAACCACCACTACCTCCCATCTCCTCCCATCCTCTCCTTCATCTCTCTGGGATGAGAGGGGGGTGAGCTTTATGAGAGGGAGAAATGCGATTGGAAATTATGGCGGCGAGGATGATCACAACAACGAAAATGACGGGAAGCCTCGGTTGAGGGTGTCAACGATGAAGATGAAAAGGATAAAAGGTAGGAAGAAAGTGAGAGAGCCAAGGTTCAGCTTTAAAACGATGACGGACGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTATGGCCAAAAGGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAAAAGAGAGTAGAAAGGTTAGCGGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCGCCTTCGGATCATAATTTAGAAGATTCTTTCATGGGTCACTTACCTTCTTCCCACCTCACCAATTTCTTCTGCTAG	735	44.49	MGSSASEEEMMVRLLKGGDQVAAAVNAAAITTNLICLPENNNKNNIISVVQQSLKPLFFTTTHHHHQQQEQQSLFPFCFPSTTTTSHLLPSSPSSLWDERGVSFMRGRNAIGNYGGEDDHNNENDGKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSFMGHLPSSHLTNFFC*	245

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
6	24728797	24731520	-	CsaV3_6G042200.1	Csa06g02834	534461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Csa06g02834	244	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	43	227	IPR044810	GO:0003700
	Csa06g02834	244	ProSiteProfiles	WRKY domain profile.	157	222	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Csa06g02834	244	PANTHER	WRKY TRANSCRIPTION FACTOR 13-RELATED	43	227	-	-
	Csa06g02834	244	SMART	WRKY_cls	162	221	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Csa06g02834	244	Pfam	WRKY DNA -binding domain	163	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Csa06g02834	244	Gene3D	WRKY domain	137	222	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Csa06g02834	244	SUPERFAMILY	WRKY DNA-binding domain	154	221	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Csa02g01560	Csa06g02834	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Csa03g00716	Csa-Chr3:6430612	Csa06g02834	Csa-Chr6:24728797	6.22E-45	dispersed
	Csa06g02834	Csa-Chr6:24728797	Csa06g01861	Csa-Chr6:16783402	2.52E-32	dispersed
	Csa02g01560	Csa-Chr2:14764150	Csa06g02834	Csa-Chr6:24728797	2.24E-60	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	32108	PF03106	WRKY	4.40E-25	CL0274	Csa	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa06g02834	-		-	csv:101208878	463.766