Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02852 ATGGCTTCCATCGATTTTTCATCCATCCTTTTTGCATTTATTATACCCTTTCTAGTTTTCATCATTTTATCTCGTATTTGGAGATGGGATTTCCATGGAATCATTCCTTGGAACTGGCCAATCGTTGGAATGACACCCACTGTTATTGCTCATATCCACCGACCCCATGATCGTGTTACTGAAGTTTTACAACAAACTGCTTTCACTTTCTTCTTCAAAGGCATCTGGTTTTCAGGTATGGACTTCCTCTTCACAGTCGACCCTTCAAATATTCACCACATCTTGAGTGCCAATTTTGAGCGATATCCCAAAGGCCCTGATTTCAAGTACATATTTGAAGTTTTGGGAGATGGTATTTTCAATTCTGATTCTGATGTTTGGAAAAATCAACGTAAAACTGCTCATTACTTGGTTCGCCACCACAATTTTCTTCAATTCTTAGAGAAAATTACATTGAATAAAGTGAAAACAGGGCTTGTTCCTATTCTTGACAGCGTTTGTGAAAATGGGTCAGTGTTGGATTTGCAAGATTTGTTTCAAAGATTCTCATTTGATTCAACTTGCATGATGGTAACTGGTTTTGATCTCAATAGTTTATCACTTGAATTCCCTGAAGTTCCTTTTTCCAAGGCTATGGATGATGCAGAGGAAGTGATTTTTGTAAGACACTTTTTCCCTAAAACAATATGGGAATTTCAAAAGAAACTCCAAATTGGTCAGCCCAAGAGACTAAAACAAGCTTGGGAAATCATAGATGAAACCATTGCTAAATTGATAGCCTCCAAAAGGAAAAGCTTGAAAAATGAAATGAAAGAAGAGGATGATAATGGCAAAGAAGGAGTTGATCTGATCACATCATATATTACAAATATAGAAAATGATGATGAATTCTTGAGGGACACAGTTTTGAACTTTATGATCGCAGGTAGAGACACTTTAAGTTCAGCGCTCTCTTGGTTTTTTTTTTGTCTTTCAAACCATCCAACCGTCGTAGAAAAGATTAGGGAAGAGCTCAGAACAACGATTCCAACGAACGAAGCTTATGATCAACGGCGGATATTTTCAATTGAAGAGGTGGATAATTTGGTTTACTTCCATGGAACATTGTGTGAAGCTCTTAGACTATATCCTCCAGTACCACTTCAACACAAGGTGTCTATACAACATGATATACTCCCAAGTGGTCATCACATAAAACCCAAAACAAAGATTTTGTTTTCATTATATGCATTGGGAAGAATGAGTGAAGTGTGGGGAAAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATTAATTCAGAAAATGGAAAGATCAAACATGTGCCATCTTACAAATTCTTGGCATTCAATGCAGGGCCAAGAACATGCTTAGGAAAACATGTGGCTTTCACTGAATTGAAAATAGTAGCAGCTGCTATCATTCATAACTACAATATTATTCAACAAGCAGGGCATGAGGTTGTTCCAAGTGCCTCTATTATTCTTCATATGAAGCATGGATTCAAGGTCAAAGTAACAAAGAGGTGGAGTACTTGA 1536 37.24 MASIDFSSILFAFIIPFLVFIILSRIWRWDFHGIIPWNWPIVGMTPTVIAHIHRPHDRVTEVLQQTAFTFFFKGIWFSGMDFLFTVDPSNIHHILSANFERYPKGPDFKYIFEVLGDGIFNSDSDVWKNQRKTAHYLVRHHNFLQFLEKITLNKVKTGLVPILDSVCENGSVLDLQDLFQRFSFDSTCMMVTGFDLNSLSLEFPEVPFSKAMDDAEEVIFVRHFFPKTIWEFQKKLQIGQPKRLKQAWEIIDETIAKLIASKRKSLKNEMKEEDDNGKEGVDLITSYITNIENDDEFLRDTVLNFMIAGRDTLSSALSWFFFCLSNHPTVVEKIREELRTTIPTNEAYDQRRIFSIEEVDNLVYFHGTLCEALRLYPPVPLQHKVSIQHDILPSGHHIKPKTKILFSLYALGRMSEVWGKDCLEFKPERWINSENGKIKHVPSYKFLAFNAGPRTCLGKHVAFTELKIVAAAIIHNYNIIQQAGHEVVPSASIILHMKHGFKVKVTKRWST* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24858100 24860203 + CsaV3_6G042380.1 Csa06g02852 534479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02852 511 Coils Coil 256 276 - -
Csa06g02852 511 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Csa06g02852 511 SUPERFAMILY Cytochrome P450 36 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 Gene3D Cytochrome P450 34 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 Pfam Cytochrome P450 38 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PANTHER ALKANE HYDROXYLASE MAH1-LIKE 17 509 - -
Csa06g02852 511 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02852 511 PANTHER CYTOCHROME P450 17 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02848 Csa-Chr6:24831617 Csa06g02852 Csa-Chr6:24858100 0 dispersed
Csa06g02849 Csa-Chr6:24836933 Csa06g02852 Csa-Chr6:24858100 0 dispersed
Csa06g02850 Csa-Chr6:24848652 Csa06g02852 Csa-Chr6:24858100 0 dispersed
Csa06g02852 Csa-Chr6:24858100 Csa07g01975 Csa-Chr7:19392733 2.69E-121 dispersed
Csa06g02851 Csa-Chr6:24850559 Csa06g02852 Csa-Chr6:24858100 3.47E-20 tandem
Csa06g02852 Csa-Chr6:24858100 Csa06g02853 Csa-Chr6:24880758 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02852 - - csv:101218649 1051.97