Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02852 | ATGGCTTCCATCGATTTTTCATCCATCCTTTTTGCATTTATTATACCCTTTCTAGTTTTCATCATTTTATCTCGTATTTGGAGATGGGATTTCCATGGAATCATTCCTTGGAACTGGCCAATCGTTGGAATGACACCCACTGTTATTGCTCATATCCACCGACCCCATGATCGTGTTACTGAAGTTTTACAACAAACTGCTTTCACTTTCTTCTTCAAAGGCATCTGGTTTTCAGGTATGGACTTCCTCTTCACAGTCGACCCTTCAAATATTCACCACATCTTGAGTGCCAATTTTGAGCGATATCCCAAAGGCCCTGATTTCAAGTACATATTTGAAGTTTTGGGAGATGGTATTTTCAATTCTGATTCTGATGTTTGGAAAAATCAACGTAAAACTGCTCATTACTTGGTTCGCCACCACAATTTTCTTCAATTCTTAGAGAAAATTACATTGAATAAAGTGAAAACAGGGCTTGTTCCTATTCTTGACAGCGTTTGTGAAAATGGGTCAGTGTTGGATTTGCAAGATTTGTTTCAAAGATTCTCATTTGATTCAACTTGCATGATGGTAACTGGTTTTGATCTCAATAGTTTATCACTTGAATTCCCTGAAGTTCCTTTTTCCAAGGCTATGGATGATGCAGAGGAAGTGATTTTTGTAAGACACTTTTTCCCTAAAACAATATGGGAATTTCAAAAGAAACTCCAAATTGGTCAGCCCAAGAGACTAAAACAAGCTTGGGAAATCATAGATGAAACCATTGCTAAATTGATAGCCTCCAAAAGGAAAAGCTTGAAAAATGAAATGAAAGAAGAGGATGATAATGGCAAAGAAGGAGTTGATCTGATCACATCATATATTACAAATATAGAAAATGATGATGAATTCTTGAGGGACACAGTTTTGAACTTTATGATCGCAGGTAGAGACACTTTAAGTTCAGCGCTCTCTTGGTTTTTTTTTTGTCTTTCAAACCATCCAACCGTCGTAGAAAAGATTAGGGAAGAGCTCAGAACAACGATTCCAACGAACGAAGCTTATGATCAACGGCGGATATTTTCAATTGAAGAGGTGGATAATTTGGTTTACTTCCATGGAACATTGTGTGAAGCTCTTAGACTATATCCTCCAGTACCACTTCAACACAAGGTGTCTATACAACATGATATACTCCCAAGTGGTCATCACATAAAACCCAAAACAAAGATTTTGTTTTCATTATATGCATTGGGAAGAATGAGTGAAGTGTGGGGAAAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATTAATTCAGAAAATGGAAAGATCAAACATGTGCCATCTTACAAATTCTTGGCATTCAATGCAGGGCCAAGAACATGCTTAGGAAAACATGTGGCTTTCACTGAATTGAAAATAGTAGCAGCTGCTATCATTCATAACTACAATATTATTCAACAAGCAGGGCATGAGGTTGTTCCAAGTGCCTCTATTATTCTTCATATGAAGCATGGATTCAAGGTCAAAGTAACAAAGAGGTGGAGTACTTGA | 1536 | 37.24 | MASIDFSSILFAFIIPFLVFIILSRIWRWDFHGIIPWNWPIVGMTPTVIAHIHRPHDRVTEVLQQTAFTFFFKGIWFSGMDFLFTVDPSNIHHILSANFERYPKGPDFKYIFEVLGDGIFNSDSDVWKNQRKTAHYLVRHHNFLQFLEKITLNKVKTGLVPILDSVCENGSVLDLQDLFQRFSFDSTCMMVTGFDLNSLSLEFPEVPFSKAMDDAEEVIFVRHFFPKTIWEFQKKLQIGQPKRLKQAWEIIDETIAKLIASKRKSLKNEMKEEDDNGKEGVDLITSYITNIENDDEFLRDTVLNFMIAGRDTLSSALSWFFFCLSNHPTVVEKIREELRTTIPTNEAYDQRRIFSIEEVDNLVYFHGTLCEALRLYPPVPLQHKVSIQHDILPSGHHIKPKTKILFSLYALGRMSEVWGKDCLEFKPERWINSENGKIKHVPSYKFLAFNAGPRTCLGKHVAFTELKIVAAAIIHNYNIIQQAGHEVVPSASIILHMKHGFKVKVTKRWST* | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24858100 | 24860203 | + | CsaV3_6G042380.1 | Csa06g02852 | 534479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02852 | 511 | Coils | Coil | 256 | 276 | - | - | |
Csa06g02852 | 511 | PRINTS | E-class P450 group I signature | 297 | 314 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | E-class P450 group I signature | 317 | 343 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506|GO:0016705 | |
Csa06g02852 | 511 | SUPERFAMILY | Cytochrome P450 | 36 | 508 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | Gene3D | Cytochrome P450 | 34 | 508 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | Pfam | Cytochrome P450 | 38 | 492 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PANTHER | ALKANE HYDROXYLASE MAH1-LIKE | 17 | 509 | - | - | |
Csa06g02852 | 511 | PRINTS | P450 superfamily signature | 308 | 325 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g02852 | 511 | PANTHER | CYTOCHROME P450 | 17 | 509 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g02848 | Csa-Chr6:24831617 | Csa06g02852 | Csa-Chr6:24858100 | 0 | dispersed | |
Csa06g02849 | Csa-Chr6:24836933 | Csa06g02852 | Csa-Chr6:24858100 | 0 | dispersed | |
Csa06g02850 | Csa-Chr6:24848652 | Csa06g02852 | Csa-Chr6:24858100 | 0 | dispersed | |
Csa06g02852 | Csa-Chr6:24858100 | Csa07g01975 | Csa-Chr7:19392733 | 2.69E-121 | dispersed | |
Csa06g02851 | Csa-Chr6:24850559 | Csa06g02852 | Csa-Chr6:24858100 | 3.47E-20 | tandem | |
Csa06g02852 | Csa-Chr6:24858100 | Csa06g02853 | Csa-Chr6:24880758 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02852 | - | - | csv:101218649 | 1051.97 |