Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02853 ATGGCTTCCATGAGCTTTTTAGAAATCCTTCTCACTTTCATACCCTTTCTTTCAGTGCTTCTTTTTCTATCTGTAAAGTGGAAATATAATGAAATTCCTTGGAATTTGCCTTTCTTCGGAATGACTCTCACTATCCTCCGTAATTTGCATAGAATTCAAGACCATTTCACTCATATTTTACGCCTTTCTTCTTTCACTTTCTTTTTCAAAGGTGCTTGGTTTGCTGATCTTGACTTCTACTTCACATCCGACCCTTCAAATATCCATCATATCTTGAGCACCAACTTTGAGCGATACCCCAAAGGCCCTGATTTCAAGTACATCTTTGAGATTTTGGGAGATGGGATTTTCAATTCTGATTCTGATGTTTGGAAAAGCCTACGAAAAACTGCTCATTCCTTGGTCCATGATCACAAATATGTTCAATTCGTGGAGAAAATTACATTGAAGAAGGTGAAAGCAGGGCTTGTTCCTGTTCTTGATAGTGTTTGTGAAAATGGGTCAGTGTTGGATTTGCAAGATTTGTTTCAAAGGTTCTCTTTTGACTCAACTTGTATGTTTGTCACTGGCTTTGATCTTCAAAGTTTATCTCTTGAATTTCCTGAAGTTCCTTTTTCCAAGGCCATGGATGAGGCAGAGGAAGTCATTTTTCTCCGACATTTTATCCCTAAGAAAATATGGAAATTTCAGAACAAACTCCAGATTGGGCCACCCACAAGGCTCAAACAAGCTTGGGAAACCATAGATGAAACCATCGGTAAATTGATAGCCTCCAAAAGGGAAAGCTTGCGAAATCAAATGAAAGAAGAGGGTGATGAGCAAAGAGAAGGAGTTGATTTGATTACATCATATATTACAAATGATACAAACAAAGATGATAAGTTTCTGAGAGACACTGTTCTAAATTTCATGATCGCGGGCAGAGACACTTTGAGTTCAGCTCTCTCTTGGTTTTTCTTTTGTCTTTCGAACAATCCAACCGTTGTAGAAAAAATTAGAGAAGAGCTCAAAACAGCAATTCCAGCCGACGAATCTCGTGATCAGTGGCGAATATTTTCAATTGATGAGTTGAAGAAGCTAGTTTATTTTCATGGGGCTTGGTGTGAAGCACTTAGACTATATCCACCAGTTCCATTTCAACACAAGGTAGCTATGCAACATGATACACTCCCAAGTGGTCATCACATAAAACCGAAAACAAAGATTGTGTTTTCATTATATGCATTGGGAAGAATGAGTGAAGTATGGGGGAAAGATTGCTTGGAGTTTAAGCCAGAGAGATGGATTTCAGAAAAGGGAAGTATCAAACATGTGCCATCTTATAAATTTTTAGCATTTAATGCAGGACCAAGAACTTGTTTGGGGAAAGAAGTAGCTTTTACTGAAATGAAACTTGTTGCAGCTGCCATGATTCATAACTACAACATTACTCAACAAATAGGCCATAAAGTTGTTCCAAATCCTTCCATCATTCTTCATATGAAACATGGATTCAAGGTCAAGGTTACAAAGCGATGGTGTTGA 1524 37.99 MASMSFLEILLTFIPFLSVLLFLSVKWKYNEIPWNLPFFGMTLTILRNLHRIQDHFTHILRLSSFTFFFKGAWFADLDFYFTSDPSNIHHILSTNFERYPKGPDFKYIFEILGDGIFNSDSDVWKSLRKTAHSLVHDHKYVQFVEKITLKKVKAGLVPVLDSVCENGSVLDLQDLFQRFSFDSTCMFVTGFDLQSLSLEFPEVPFSKAMDEAEEVIFLRHFIPKKIWKFQNKLQIGPPTRLKQAWETIDETIGKLIASKRESLRNQMKEEGDEQREGVDLITSYITNDTNKDDKFLRDTVLNFMIAGRDTLSSALSWFFFCLSNNPTVVEKIREELKTAIPADESRDQWRIFSIDELKKLVYFHGAWCEALRLYPPVPFQHKVAMQHDTLPSGHHIKPKTKIVFSLYALGRMSEVWGKDCLEFKPERWISEKGSIKHVPSYKFLAFNAGPRTCLGKEVAFTEMKLVAAAMIHNYNITQQIGHKVVPNPSIILHMKHGFKVKVTKRWC* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24880758 24883782 + CsaV3_6G042390.1 Csa06g02853 534480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02853 507 Gene3D Cytochrome P450 24 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 SUPERFAMILY Cytochrome P450 27 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Csa06g02853 507 PANTHER CYTOCHROME P450 13 505 - -
Csa06g02853 507 PANTHER ALKANE HYDROXYLASE MAH1-LIKE 13 505 - -
Csa06g02853 507 Pfam Cytochrome P450 71 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02853 507 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02851 Csa-Chr6:24850559 Csa06g02853 Csa-Chr6:24880758 1.54E-17 dispersed
Csa06g02853 Csa-Chr6:24880758 Csa07g01975 Csa-Chr7:19392733 2.70E-117 dispersed
Csa06g02852 Csa-Chr6:24858100 Csa06g02853 Csa-Chr6:24880758 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02853 - - csv:101204712 1043.88