Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02866 ATGGCGAATGAGTTTGGTGAATCAACGAGTATGCCACATCAAAACCCATCTTGCTCTACTAATAGTGATACTACTAATAATAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCGATTATTACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTCAAGAGGAAAAGTTGGTTCCTCTTTATGGTAGGGGTAAAATACCATCTGATCCAAGATTAAATACATATCCTGGTCTTGATATTCCAAATCGTCCTGCTGGTCAAAGGCCTCAAACGGCACCACCTCCGGTTCCTAACAATTTTCCGAACTATGGATTTGGATTCGCTGGTGGCTTTATGCCAATGGCATCGGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCCACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTTCTTTTACTTGTTGGTGTATTTGTAATTCTTGCCTTGCTCTGGTGGTAG 690 40.87 MANEFGESTSMPHQNPSCSTNSDTTNNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNTYPGLDIPNRPAGQRPQTAPPPVPNNFPNYGFGFAGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24968539 24970384 + CsaV3_6G042520.1 Csa06g02866 534493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02866 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Csa06g02866 229 Pfam Zinc finger, C3HC4 type (RING finger) 34 75 - -
Csa06g02866 229 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Csa06g02866 229 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 228 - -
Csa06g02866 229 SUPERFAMILY RING/U-box 31 88 - -
Csa06g02866 229 SMART ring_2 35 75 IPR001841 -
Csa06g02866 229 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Csa06g02866 229 MobiDBLite consensus disorder prediction 1 23 - -
Csa06g02866 229 CDD RING-HC_AtRMA_like 33 77 - -
Csa06g02866 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03565 Csa-Chr3:31876042 Csa06g02866 Csa-Chr6:24968539 2.76E-26 dispersed
Csa06g02866 Csa-Chr6:24968539 Csa07g00439 Csa-Chr7:3162453 6.36E-28 dispersed
Csa02g02021 Csa-Chr2:18695130 Csa06g02866 Csa-Chr6:24968539 5.44E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02866 K10666 - csv:101205026 458.759