Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02874 ATGGGAATCGCAAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCAAGGAATCTTCACCTTCTCTAATGCCACCAGCTTCGACAAATCCAATCCATCCTCCCTCCCCGCCCAACACATCCGCCCCGACAAGCTCCGTCTTGAATCTTTCTCCGACTCCATCCCTCCACCACCATCCCACCTCGTCGGAATAGACGAACACCATCACCAACAACAACTTCATCATGTCTATGCCTCCCCATCTAGTGGGGGAACCATGTTATCTGACATGTTCAATTTCCCTCCCACTACTCCCTCCGCCGCGGCTACTACGGTCGAATTCTCCGACAATTTTCGAACTTTACGCCCCCCTAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCACGATCCCCTTCGCCACCCTCGACTTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACCCTCTCCAGGGTTTCGAAGGTGGGGTTGGCGTCGGAGACCAAACGACGGCTTTTGGACAATTCGCTGTCGTGGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCTTCCTTACAACACTTGGAGGACGCTGCTGTTGCGAAAGCGGGTGAATTACGAATTAGGGATGGTGGGATTTTGTATAATTATAACAGCAACAACAATCAAGTCCATGGTGATGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGGAATAATGAGAATTCTCCTCATAGCTTTCAAGCTAATTCACAAATAATCAATAATCCCAACAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTCAATGTGTTGAGGAATTCAAAATATGTCAAACCTGCACAAGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAAAGTTCAATTGAAGAAGAACAAGTTCAATACTAAACCAAACCCCAATACTGAATCCGCTACCAACGCCACGGCCACCACTTCCGCCGCAGCTACCGGTGGTTCAACATCTAAAGATCAACCTCCCTTATCGGCTGCTGACAGAATTGAACATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTGGAACGTAGATATAACCTATATCGTGAGCAAATGCAGATGGTAGTGAACTCATTCGACCTAGTGATGGGGTTCGGGGCAGCAGCACCATACACGACGTTGACACAAAAGGCAATGTCGAGGCACTTTCGGTGCTTGAAAGATGCAATAGCTGAGCAGTTAAAGCAGAGCTATGAGGCGTTAGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGTGAGACACCAAGATTGAAACTTCTTGAACAAAGCCTTAGGCAACAAAGGGCTTTCCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTTCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTTTTCGAGCATTTTCTTCATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCAATGGTGGAAGAAATGTACCAACTTGAAGGCAAAGTTGATACAGATCAACAATCACAAGAGGATACCCCACAAAATAATAATAACAATAACAGTAATAAAACACAAAATAATGCCATAAATCAACAAAATCCAACCAGCGGCGCCGTGGAAGAAGTAGGGGCGGAGTACACGGCCGGGCACGACTACTCCGATTTGCATGATGTGTGGCGACACGGAAGTAGTGGATCAGATCATCAACAACATTACGGGACCATGCCTGAGGATGTTACTGCGGCGGCTGACATGAGTCCTGGACCAACACTTATACGATTTGGGACCACGAACACTGCCACTGGTGACGTTTCCCTCACGTTAGGCCTCCGCCACGCCGGAAACACCTCCGCCGCCGCCGCCGCTGCCGCTGCCGCTGCCGTGGATAATCCTTCTTTCTCTCTCAGAGACTTTGGTCAGTCTTAA 2097 47.73 MGIAKGPLILSNKATSCANSSMSHDYHHQGIFTFSNATSFDKSNPSSLPAQHIRPDKLRLESFSDSIPPPPSHLVGIDEHHHQQQLHHVYASPSSGGTMLSDMFNFPPTTPSAAATTVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPANPLQGFEGGVGVGDQTTAFGQFAVVESQGLSLSLHSSSLQHLEDAAVAKAGELRIRDGGILYNYNSNNNQVHGDGGSGSTSSILQYSFRNNENSPHSFQANSQIINNPNNHQVQIGFGSSLGVVNVLRNSKYVKPAQELLEEFCSVGKVQLKKNKFNTKPNPNTESATNATATTSAAATGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDQQSQEDTPQNNNNNNSNKTQNNAINQQNPTSGAVEEVGAEYTAGHDYSDLHDVWRHGSSGSDHQQHYGTMPEDVTAAADMSPGPTLIRFGTTNTATGDVSLTLGLRHAGNTSAAAAAAAAAAVDNPSFSLRDFGQS* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25012164 25018036 + CsaV3_6G042600.1 Csa06g02874 534501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02874 698 Gene3D - 490 552 - -
Csa06g02874 698 SMART HOX_1 487 551 IPR001356 GO:0003677
Csa06g02874 698 MobiDBLite consensus disorder prediction 140 156 - -
Csa06g02874 698 Pfam Associated with HOX 298 434 IPR006563 -
Csa06g02874 698 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 75 676 - -
Csa06g02874 698 Coils Coil 374 401 - -
Csa06g02874 698 MobiDBLite consensus disorder prediction 559 594 - -
Csa06g02874 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 676 - -
Csa06g02874 698 MobiDBLite consensus disorder prediction 326 361 - -
Csa06g02874 698 SMART prehox3 293 435 IPR006563 -
Csa06g02874 698 MobiDBLite consensus disorder prediction 564 594 - -
Csa06g02874 698 MobiDBLite consensus disorder prediction 326 366 - -
Csa06g02874 698 ProSiteProfiles 'Homeobox' domain profile. 484 547 IPR001356 GO:0003677
Csa06g02874 698 Pfam Homeobox KN domain 504 543 IPR008422 GO:0003677|GO:0006355
Csa06g02874 698 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Csa06g02874 698 MobiDBLite consensus disorder prediction 136 166 - -
Csa06g02874 698 CDD homeodomain 487 548 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01490 Csa-Chr2:14284494 Csa06g02874 Csa-Chr6:25012164 8.69E-165 dispersed
Csa03g03143 Csa-Chr3:29231761 Csa06g02874 Csa-Chr6:25012164 2.19E-64 dispersed
Csa04g01545 Csa-Chr4:15002380 Csa06g02874 Csa-Chr6:25012164 4.59E-63 dispersed
Csa05g00256 Csa-Chr5:1549371 Csa06g02874 Csa-Chr6:25012164 1.83E-87 dispersed
Csa06g02874 Csa-Chr6:25012164 Csa07g02163 Csa-Chr7:20537174 3.23E-74 dispersed
Csa06g02874 Csa-Chr6:25012164 Csa06g02470 Csa-Chr6:21978294 8.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32112 PF07526 POX 1.90E-49 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02874 - - csv:101202767 1268.45