Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02887 ATGACTTTGCATCGAAACTGCTTGATCGTTGTAATCACAATTTTCTCGGCTTTTTTAACAATCGCCGAGGGTTTAACGTCCTGCGAAACCGGTAATTCGGCTCAATTTGTACGCCATCCGTTTGGATTCACAGACGTGAAACCAATCAAATTGGGTTGCAGCAAAAATGGCGAGATTCAAATCGGCAGATTCCAGGTTCAGAACATTAATGAAAGAAGTATCATCATCAAACTTCCTACAGGGTGCAATATCCCTATCAATTCACTCTCAGAACTGTCCAGCAAAAACTACAAGCCCACCCTCCGCAACAGTCTCTTCTTGAATTGTACCGAACAACCACTTCCATGCGGAGTCATGGGGAATTTCACCCTGAATCAGCCGACGGACTGCGGCCTTAAGAGTAATAATATGAGCTGTTTCACCAAGACCGAGCAAAATGGATTTCTGCCTCCTTTAAATAAGTGCCACTCCCTTTTGTCCTCTGTATTCGTTAATTTTACGTCAAATTCGACCACTCAGTTCGAGGTCGAGTTTGGGGTCATTGAGTTAGAGTGGTGGGTCTCTCCTTCGTCTGTCGCACAATGCTCAAAAAATGCCAATCGTGAGAACATTACCAGCTCGACGGAGAACCTAGGATTTCGTTGCCAGTGCGAAGAAGGGTTTGAAGGAAATGCTTATGACAACGACGGCGGCGGCTGCCGGAGAGTTTCTCACAAATGCAACCCTCCAACATACATAACTGGACGATGTGGTGGCGAAAGCAAAGTCGCTGCACTAATTGCAGGTGTCATTGTAGGGGCGTTTCTAATGGCTGTCTTGACCCTTATCTGTTACTGCATCCGACGCCGCTCAATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCCGGAAATTCCAGTGTTACTTTATACCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCTGAGAAACAACGTCTGGGAACTGGAGCCTTTGGTACAGTCTATGCCGGAAGGCTTCACGAGGATGAGTGGGTTGCTGTAAAAAGGATCAAATACAGAGACCACAACAGCATTGACCAGGTTATGAATGAGATAAAACTCCTTTCCTCGGTGAGCCACCCAAATCTGGTCCGCTTACTTGGCTGCTGCATCGAGGAGGGCCAACAGATCCTTGTATACGAGTTTATGCCCAATGGAACTCTCTCTCAACATCTCCAGAGAGAGCGTGGAAATGGACTCCCGTGGACAACACGGCTCACTATAGCAGCCGAGACTTCTCGTGCAATAGCATACCTTCATTCTTCTGTGCACCCACCAATATATCACAGAGACATCAAATCGAGCAATATACTCCTGGATCATGGTTTCAAATCAAAAGTTGCAGATTTTGGTCTCTCTCGACTTGGTATGACAGAAATATCGCACGTCTCAACAGCTCCCCAAGGAACCCCAGGCTACGTTGATCCACAATACCATCAAAATTTTTATCTTTCAGACAAAAGTGACGTATATAGTTTTGGAGTAGTCCTAGTAGAGATAATAACAGCATTGAAAGTGGTTGATTTCACTCGTCCCCAAAGTGAAGTAAACTTAGCTGCACTTGCCATTGATAGGATTGGGAGAAACTCTGTGGATGAACTAATTGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTCTACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTCCACAGCGACATGAGACCTTCAATGACAGAAGTAGCAGAGGAATTGGAAAGCATCAGACGCAGTGGATGGACATCAATGGAGGAGCATTTTTGTGGAGCATCATCTGCAGGATCAGCTTGTTCATCTCCTCGTAGCATAAGCGAGAGATCCATAAGTGGCATAACAATTAAGAAGGCCGGGCTGCTTGCAGGATTGGGAAGCCAGAGATTGATAATCCCGCCGGAGAACAACCATAATAAGGACTATCTACCTCCTGTGGAGGAGGTTATGGATAGCTCCCCAGTTTCAATACAGGATCCTTGGTTAAGTGAACAAAGCTCCCCTTCAACAAATAGTTTATTGGGTAATGTAGCACGGTGA 2094 45.8 MTLHRNCLIVVITIFSAFLTIAEGLTSCETGNSAQFVRHPFGFTDVKPIKLGCSKNGEIQIGRFQVQNINERSIIIKLPTGCNIPINSLSELSSKNYKPTLRNSLFLNCTEQPLPCGVMGNFTLNQPTDCGLKSNNMSCFTKTEQNGFLPPLNKCHSLLSSVFVNFTSNSTTQFEVEFGVIELEWWVSPSSVAQCSKNANRENITSSTENLGFRCQCEEGFEGNAYDNDGGGCRRVSHKCNPPTYITGRCGGESKVAALIAGVIVGAFLMAVLTLICYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRLHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRNSVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELESIRRSGWTSMEEHFCGASSAGSACSSPRSISERSISGITIKKAGLLAGLGSQRLIIPPENNHNKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAR* 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25086747 25091365 - CsaV3_6G042730.1 Csa06g02887 534514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02887 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Csa06g02887 697 MobiDBLite consensus disorder prediction 674 697 - -
Csa06g02887 697 Gene3D Phosphorylase Kinase; domain 1 283 396 - -
Csa06g02887 697 SUPERFAMILY Protein kinase-like (PK-like) 301 594 IPR011009 -
Csa06g02887 697 MobiDBLite consensus disorder prediction 672 697 - -
Csa06g02887 697 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
Csa06g02887 697 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Csa06g02887 697 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 19 634 - -
Csa06g02887 697 ProSiteProfiles Protein kinase domain profile. 321 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02887 697 SMART serkin_6 321 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02887 697 Pfam Protein tyrosine and serine/threonine kinase 324 593 IPR001245 GO:0004672|GO:0006468
Csa06g02887 697 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 634 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02634 Csa-Chr5:27440239 Csa06g02887 Csa-Chr6:25086747 4.91E-89 dispersed
Csa06g00839 Csa-Chr6:6734072 Csa06g02887 Csa-Chr6:25086747 1.08E-53 dispersed
Csa06g02887 Csa-Chr6:25086747 Csa03g03354 Csa-Chr3:30364616 9.29E-92 dispersed
Csa04g01519 Csa-Chr4:14847537 Csa06g02887 Csa-Chr6:25086747 8.14E-90 transposed
Csa06g00136 Csa-Chr6:890174 Csa06g02887 Csa-Chr6:25086747 1.18E-94 transposed
Csa02g02013 Csa-Chr2:18662993 Csa06g02887 Csa-Chr6:25086747 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78411 PF07714 PK_Tyr_Ser-Thr 7.50E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02887 - - csv:101222324 1376.69