Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02922 ATGCGTTGGCTGCGTAATATCTCCTTTACCCCTTCTTCAATGGTGAGGCTTCCGGGTTCTACAACTGGCGGTGGTGATTCTCCCACCCGAAGATCTACTACTCGAGGTTCTGCTGAAAATAACTACCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAGGTATTCCCGCCATAGGAAGCTTCGTAACTTAAGTGGACGTGAACACGTCGATTCTTCTTTGGCTAAATGGTCTGATACTGCGCCTGAACCTGTCTCTTTGTCGCGATCACCCAGCACCTCTGATCACCCTGCTGTTCCCTTACCACTCCCTGAGGTTTCTCCCTTATTTCAGCCTCGTGAAAGGATCTCCACTTCCAATTCTGCTGGGGGAGAGGGTGATTGCCCTCTTCCATCGCCCAAAGGTTCGCGTGGACGCGCCGGGGATGAACGTGATGTAGATAGAGATAGAAATGCACCCCCTCAGAAGATTGGGGGTGGAATCTCCCCTAACGCTTCCATTAAAAGTGTATCTGATTCTGTGGGGGAAAGACATAAGAAAGAAGGTCAGATTGAAGCAAGGTTGTCAGGTAGGGCGAATCAGGATGCAAGGAGATATCCCGAAAATTCTCGGAATGGTTTTTGGATTGATGTTCCTAGTAGGAGTGCTCCTACTAGTCCTTATACAAGTCCTACACCTAGTCCTCAAAGAAATATTTCGGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCGGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATTGCTCTACTCTTAGTACTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAAAAGTCCCCACCTAGATCCCAGAAGTCCAACAGGACCTACATCTCCATTGCACGCCAAGATTTCCCATGAAACACATGCTATGCGCCGTGAGGGTTCTGGTCATGTCAGTGTCCACCCTTTGCCTCTTCCTCCTGGAGTGCCAATGCCTTCAGCGTCAATCCCAACAATGGCTTCAGCACCAACCTCCATCAATCTATCATCACCCCCTGTGTCTTCACCATCACATTCAATACCTTCGGCATCATGCTCGATGGCTCTACCGTCAACCCCGATGGCATCACCATCAACCCCAATTTCACAAGCTAACACTAAGAGCGAATCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGTCGGGGCACATTTGGAAGTGTGTATGTTGCTAGCAACAGACAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCACGACGATCCAAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTTCAATACTATGGTAGTGATATTATTGACGATCGATTATATATATACCTGGAGTATGTACATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCTATGACAGAATCTGTTGTTCGAAATTTTACTCGACACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACAATACACAGGGACATTAAAGGTGCTAATTTGCTGGTAGATTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACACCTTACAGGACAAGTTGCTGATCTTTCTTTGAAGGGAAGTCCATATTGGATGGCTCCTGAGCTCCTTCTGTCTGTGATGCAGAAAGATAACACCCCCGATCTAGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAAGTCATGAAAGATACCCCACCAATGCCTGAATCATTGTCATACGAAGCGAGAGATTTCTTAAAATGTTGCTTTCAAAGAAATCCTGCAGAGAGGCCGACCGCTGCCATGCTGCTTGAACATCCGTTCATGAAAAACTTGCAGTATACAGATGCTTCATCTTGCTCTCAGGTTGTTGCTGGAGCAAGTTTGATGGATAAATGTTATAGCCCAAGTAAACAATATTCAAGTAAATCTGATCAGTCTTCCATGCTTCCAAGCCCACAAAATTCCAAGGGAAAGTTAGCGGCCGATAATGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAAGCTCTTCCAATGGTGTCTCCTCTGCGCTCGGTTCCCAATGCGCATCATTATGGTTCCCCTACAAATGCAGCTGATATTGTAAATCAAATCAATAGGAAGAACCATACATTAATATGA 2310 45.58 MRWLRNISFTPSSMVRLPGSTTGGGDSPTRRSTTRGSAENNYRGIVWRFGASRYSRHRKLRNLSGREHVDSSLAKWSDTAPEPVSLSRSPSTSDHPAVPLPLPEVSPLFQPRERISTSNSAGGEGDCPLPSPKGSRGRAGDERDVDRDRNAPPQKIGGGISPNASIKSVSDSVGERHKKEGQIEARLSGRANQDARRYPENSRNGFWIDVPSRSAPTSPYTSPTPSPQRNISVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSTESSPMHSPRGKSPHLDPRSPTGPTSPLHAKISHETHAMRREGSGHVSVHPLPLPPGVPMPSASIPTMASAPTSINLSSPPVSSPSHSIPSASCSMALPSTPMASPSTPISQANTKSESISMKNQWQKGKLIGRGTFGSVYVASNRQNGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGSDIIDDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNTPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPMPESLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQYTDASSCSQVVAGASLMDKCYSPSKQYSSKSDQSSMLPSPQNSKGKLAADNVIGPLSHHETSDLTVMSRYSPRSTLEALPMVSPLRSVPNAHHYGSPTNAADIVNQINRKNHTLI* 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25325579 25331961 + CsaV3_6G043080.1 Csa06g02922 534549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02922 769 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 741 - -
Csa06g02922 769 ProSitePatterns Protein kinases ATP-binding region signature. 395 418 IPR017441 GO:0005524
Csa06g02922 769 MobiDBLite consensus disorder prediction 65 232 - -
Csa06g02922 769 MobiDBLite consensus disorder prediction 679 700 - -
Csa06g02922 769 MobiDBLite consensus disorder prediction 171 197 - -
Csa06g02922 769 ProSiteProfiles Protein kinase domain profile. 389 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02922 769 MobiDBLite consensus disorder prediction 1 38 - -
Csa06g02922 769 SUPERFAMILY Protein kinase-like (PK-like) 372 693 IPR011009 -
Csa06g02922 769 MobiDBLite consensus disorder prediction 679 702 - -
Csa06g02922 769 MobiDBLite consensus disorder prediction 263 353 - -
Csa06g02922 769 SMART serkin_6 389 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02922 769 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 741 - -
Csa06g02922 769 Pfam Protein kinase domain 390 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02922 769 Gene3D Transferase(Phosphotransferase) domain 1 385 689 - -
Csa06g02922 769 MobiDBLite consensus disorder prediction 136 151 - -
Csa06g02922 769 MobiDBLite consensus disorder prediction 329 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02922 Csa-Chr6:25325579 Csa06g03499 Csa-Chr6:28626745 1.92E-45 dispersed
Csa02g00416 Csa-Chr2:2864440 Csa06g02922 Csa-Chr6:25325579 1.14E-73 transposed
Csa03g01727 Csa-Chr3:12943196 Csa06g02922 Csa-Chr6:25325579 7.02E-113 transposed
Csa03g02841 Csa-Chr3:27159542 Csa06g02922 Csa-Chr6:25325579 1.05E-58 transposed
Csa05g00475 Csa-Chr5:3086912 Csa06g02922 Csa-Chr6:25325579 5.56E-115 transposed
Csa05g01522 Csa-Chr5:17767126 Csa06g02922 Csa-Chr6:25325579 3.45E-73 transposed
Csa05g02866 Csa-Chr5:28989954 Csa06g02922 Csa-Chr6:25325579 2.22E-14 transposed
Csa06g02446 Csa-Chr6:21834105 Csa06g02922 Csa-Chr6:25325579 1.44E-73 transposed
Csa06g02776 Csa-Chr6:24207515 Csa06g02922 Csa-Chr6:25325579 7.66E-109 transposed
Csa06g02823 Csa-Chr6:24627090 Csa06g02922 Csa-Chr6:25325579 1.75E-15 transposed
Csa02g02001 Csa-Chr2:18601356 Csa06g02922 Csa-Chr6:25325579 1.99E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78412 PF00069 Pkinase 3.10E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02922 - - csv:101219486 1452.96