Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02946 ATGGATTGGGTTCGAGGAGATGAGATTGGATATGGAAGTTTTGCTACCATCAATTTAGCCACGTCTTGTTCCGGTGATCGATTTCCTCCATTGATGGCCGTTAAATCATCTGGCCTTGTTTGCTCTGCCTCCCTCAAGAACGAGAAGCAAGTTTTGGATCTTCTTGGTGATGATTGCCCACAAATTATTAGGTGTTTCGGGGACAGTTGTAGTGTTGAGAACGGTGAGGAACTTTACAATCTGTTCCTCGAGTATGCTAGTGGTGGAAGTTTAGCCGATAGAATACAGAGCCGCGGTGGTCGGCTGCCGGAATTTGAGGTTCGACGGTACACGAGGACTATTCTTGAAGGGCTTCGGTATATTCACGGAAAGGGATTTGTTCATTGCGATGTTAAGCCTAGGAATATTCTCGTGTTTGGTGACGGTGATGCTAAGATTGCCGATTTCGGATTGTCGAAGAAGGCGGGAAAGAACAGAGTGGGAACAGGGGAAGAGACAGGGAAATTTCAATTGAGAGGTTCTCCTCTGTACATGTCACCGGAATCGGTCAACGATAATGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGCGCGGTGGTGGAGATGTTGACAGGGAAGCCCGCGTGGAATTGTCGGCCGGAATCCAACGTGTTTGCTTTGTTAATCAAAATTGGGATTGGAGAAGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAAAAAATGTTTGGTGAAGGATCCATTAAAGAGATGGACGGCCGATATGCTTCTAAAACACCCATTTGTGGCAGAGTCCGGGCGGTGTGTTCCATTGGCGGGCGTGGAGGAAGTATCAACGTCGCCAAGATGTCCTTTCGATTTCGAAGATTGGGCATCGATTCATTCACAAGAGAGCGATCCTAGAAATGAAGAGGAAGCAAATTGTTGGTTGAATAATTGGTCGTGTTCTCCAAGGGAGAGGCTGCTTGAACTAGTGGGGAATGGGGCAGTAGAGTGGTCGGTCACTGACAATTGGGTCAGGGTCAGATGA 1053 47.39 MDWVRGDEIGYGSFATINLATSCSGDRFPPLMAVKSSGLVCSASLKNEKQVLDLLGDDCPQIIRCFGDSCSVENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGKNRVGTGEETGKFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCRPESNVFALLIKIGIGEELPEIPKDLSEEGKDFLKKCLVKDPLKRWTADMLLKHPFVAESGRCVPLAGVEEVSTSPRCPFDFEDWASIHSQESDPRNEEEANCWLNNWSCSPRERLLELVGNGAVEWSVTDNWVRVR* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25516201 25517817 + CsaV3_6G043320.1 Csa06g02946 534573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02946 350 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 310 - -
Csa06g02946 350 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02946 350 Gene3D Transferase(Phosphotransferase) domain 1 93 312 - -
Csa06g02946 350 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Csa06g02946 350 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Csa06g02946 350 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02946 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Csa06g02946 350 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02946 350 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Csa06g02946 350 CDD STKc_MAPKKK 2 270 - -
Csa06g02946 350 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Csa06g02946 350 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 310 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01433 Csa06g02946 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02946 Csa-Chr6:25516201 Csa07g00349 Csa-Chr7:2582930 1.86E-74 dispersed
Csa01g02295 Csa-Chr1:20065055 Csa06g02946 Csa-Chr6:25516201 7.89E-14 transposed
Csa03g03892 Csa-Chr3:34161372 Csa06g02946 Csa-Chr6:25516201 3.39E-56 transposed
Csa07g00590 Csa-Chr7:4274103 Csa06g02946 Csa-Chr6:25516201 5.37E-54 transposed
Csa07g01664 Csa-Chr7:17111937 Csa06g02946 Csa-Chr6:25516201 1.36E-62 transposed
Csa07g01912 Csa-Chr7:18978537 Csa06g02946 Csa-Chr6:25516201 1.69E-63 transposed
Csa02g01433 Csa-Chr2:13763727 Csa06g02946 Csa-Chr6:25516201 6.25E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78414 PF00069 Pkinase 1.20E-52 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02946 - - csv:105435904 731.865