Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02950 ATGTCTGATCACAAATCAGGCTCCATGGCCGATCAGCTCTCCAAGCAGACCTCTATTTTTGGTCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCAGCTTTTGTGCTTTTTCTCTTCCTAATTTCTCTTTGGATTGCTTCAAAACGCTCTCGCAAGAAGATTTCTAACAGACCCACCATTCCCATCGTCTCTAAAGAAATCCAAGAGATCAGAATCGATCATCCCCTCCCTCAAAACCAAGAACATAATAAGCCCAGTAGGTCCCATTTTCAGGTCGACCCACTTCCGGAGCCGGAACCAATTCCGGGAATTGAGCGTCAAGCGTTGCTTTCGTTGCCTCAGGAGGAGGAGCGAGTGAATAGAATTCATATTGACATCGGGAAGGATCATAGGATTTCGTATCCTGAGCGCCTTGGTCGGTCGTCTTCCTCGCAGGGTAGTGGAGAGGGGCGATGTGGTGGTGATCAGCTGCCTATGGTGGTGCCGGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCCTCGACTAATGGGTTCTCCCCAGATAATGTCATTGGTGAGGGTGGATATGGAATTGTTTACCATGGCATTTTGGAGGATGGAACTCAGGTTGCTGTGAAGAATTTGCTAAACAATAGGGGACAAGCCGAGAAGGAGTTCAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAGCTTAGTTAGATTGCTTGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTATATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAACATCATTCTTGGAACGGCTAAAGGGCTAGCTTACCTTCACGAGGGATTGGAACCAAAAGTCGTTCATCGGGATATCAAATCAAGCAATATCCTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGCCTTGCAAAGCTACTATGCTCTGACAATAGTTATATTACAACCCGAGTTATGGGAACATTTGGTTATGTTGCGCCAGAATATGCGAGTACAGGAATGCTGAATGAAAGAAGTGACGTGTATAGTTTTGGAATACTTGTTATGGAAATAATATCAGGACGGAACCCTGTTGATTATAGTCGTCCTCCAGATGAGGTGAACCTGATTGATTGGCTTAAGAGAATGGTTAGTAACCGTAATCCAGAGGGCGTATTGGATCCAAAGCTTGCTGAAAAGCCTACTACAAGAGCATTGAAGCGGGCTCTACTTGTTGCATTACGCTGTGTGGACCCAAATGCTCAGAAACGGCCAAAAATGGGACATATTATTCATATGCTAGAAGCTGAAGATGCTAACTTTAAAGGGGATCGAAAAGCTGGAAAAGACCCCGAGAATTCACATTCAAACAATGTCAATAATGGTTTGAATGAAAGGCAGGCGACAGAATTAGGTGGCAACAATGTGGATGAACTTGCTACTTGA 1518 44.73 MSDHKSGSMADQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKKISNRPTIPIVSKEIQEIRIDHPLPQNQEHNKPSRSHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIDIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFSPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKSLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLAEKPTTRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEDANFKGDRKAGKDPENSHSNNVNNGLNERQATELGGNNVDELAT* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25534935 25539366 - CsaV3_6G043360.1 Csa06g02950 534577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02950 505 CDD STKc_IRAK 193 459 - -
Csa06g02950 505 MobiDBLite consensus disorder prediction 77 99 - -
Csa06g02950 505 PANTHER OS01G0323000 PROTEIN 1 498 - -
Csa06g02950 505 PANTHER RECEPTOR-LIKE KINASE PLANT 1 498 - -
Csa06g02950 505 ProSiteProfiles Protein kinase domain profile. 187 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02950 505 MobiDBLite consensus disorder prediction 477 495 - -
Csa06g02950 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Csa06g02950 505 Gene3D Phosphorylase Kinase; domain 1 168 262 - -
Csa06g02950 505 MobiDBLite consensus disorder prediction 466 505 - -
Csa06g02950 505 Gene3D Transferase(Phosphotransferase) domain 1 263 473 - -
Csa06g02950 505 Pfam Protein kinase domain 190 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02950 505 SUPERFAMILY Protein kinase-like (PK-like) 168 459 IPR011009 -
Csa06g02950 505 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02950 505 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00872 Csa-Chr3:7303454 Csa06g02950 Csa-Chr6:25534935 0 dispersed
Csa06g01183 Csa-Chr6:9996093 Csa06g02950 Csa-Chr6:25534935 8.83E-177 dispersed
Csa06g02950 Csa-Chr6:25534935 Csa07g01177 Csa-Chr7:11510722 2.30E-180 dispersed
Csa04g00173 Csa-Chr4:992582 Csa06g02950 Csa-Chr6:25534935 2.78E-88 transposed
Csa02g01935 Csa-Chr2:18160240 Csa06g02950 Csa-Chr6:25534935 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78415 PF00069 Pkinase 5.40E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02950 - - csv:101214966 988.408