Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g02951 | ATGGACCATTCTGTTCCCAACAACTGCGATCGAAATGCATGTTCTTCTTCGACGTGGACTCTCCCCGCCCCAGCCCTCTCTTCCTCTTCCTCTTCACCTCCCGACGATATCTCTCTGTTTCTTCAACAGATTTTGCGGCGTTCCTCTTCCTCTGCTCCTCACTTCTCTCTTCTCTCTCCCTCTCCCTCCATCTTTTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACCTTCCCCCTCCATACGGACCGCCCAATGCAGTGCCGGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCTAATTCCCCATCATCCGGTGTACTACATGATCCCTTGCGCACTTTTCCCACATCCATTCCACCCAACGCGTCTTCTACGTCGGTCGGAGCTAGTGATCATAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCTGCCTACAAAGCCCAATCCTCGCAGCTCTTCCAAGAGAAGCAGAGCCGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAAGCGCTGCAAAATCTGATCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTAGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTTTGCAATATCTCCAACTTTCTCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCTAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGCTGAAACTCCATTTGAATTGGTCCCGCCCATCCAGGCTCACCTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAATCTAAGGAGATTTGCAGCAGAGATTTACTGCGAGATGATCACCAGGCGGTGAATGTGAATGTGAGCCAATCGGAGACAACTCCCTTAGTATCATGCCCCTATAACATACCAGAGACTCCTGATTTACAAGGATTACAGAATGGCCTCTCAGTGGAACCGTGCATCATTGAAGGAAATCGGTCTGGCGTGCTTCTGAATTACACCCCAGAGCACAGCCTCGTATTCCCTTCCCCTTTTAATGGCATCAAACAAGAAGACCGACTGAAACAATAG | 1248 | 47.84 | MDHSVPNNCDRNACSSSTWTLPAPALSSSSSSPPDDISLFLQQILRRSSSSAPHFSLLSPSPSIFSELTCNIRAFTPPTHNLPPPYGPPNAVPDEISAVDSSEQFANSPSSGVLHDPLRTFPTSIPPNASSTSVGASDHNENDEFDCESEEGLEALVEELPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKAASIHPFMSDIGRTNAAETPFELVPPIQAHLVPFYLSESSKSKEICSRDLLRDDHQAVNVNVSQSETTPLVSCPYNIPETPDLQGLQNGLSVEPCIIEGNRSGVLLNYTPEHSLVFPSPFNGIKQEDRLKQ* | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 25541506 | 25544586 | - | CsaV3_6G043370.1 | Csa06g02951 | 534578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g02951 | 415 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 174 | 223 | IPR011598 | GO:0046983 | |
Csa06g02951 | 415 | Gene3D | - | 169 | 233 | IPR036638 | GO:0046983 | |
Csa06g02951 | 415 | PANTHER | TRANSCRIPTION FACTOR SPATULA | 28 | 346 | - | - | |
Csa06g02951 | 415 | Pfam | Helix-loop-helix DNA-binding domain | 178 | 224 | IPR011598 | GO:0046983 | |
Csa06g02951 | 415 | MobiDBLite | consensus disorder prediction | 170 | 186 | - | - | |
Csa06g02951 | 415 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 28 | 346 | IPR031066 | - | |
Csa06g02951 | 415 | MobiDBLite | consensus disorder prediction | 122 | 186 | - | - | |
Csa06g02951 | 415 | CDD | bHLH_AtPIF_like | 174 | 236 | - | - | |
Csa06g02951 | 415 | Coils | Coil | 213 | 233 | - | - | |
Csa06g02951 | 415 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 171 | 234 | IPR036638 | GO:0046983 | |
Csa06g02951 | 415 | MobiDBLite | consensus disorder prediction | 123 | 138 | - | - | |
Csa06g02951 | 415 | SMART | finulus | 180 | 229 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g02185 | Csa-Chr4:22635255 | Csa06g02951 | Csa-Chr6:25541506 | 1.91E-31 | dispersed | |
Csa06g02106 | Csa-Chr6:18737868 | Csa06g02951 | Csa-Chr6:25541506 | 1.45E-09 | dispersed | |
Csa06g02951 | Csa-Chr6:25541506 | Csa07g01462 | Csa-Chr7:14980031 | 8.91E-33 | dispersed | |
Csa02g01934 | Csa-Chr2:18154564 | Csa06g02951 | Csa-Chr6:25541506 | 3.81E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32124 | PF00010 | HLH | 4.90E-14 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g02951 | - | - | csv:101217594 | 765.377 |