Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02951 ATGGACCATTCTGTTCCCAACAACTGCGATCGAAATGCATGTTCTTCTTCGACGTGGACTCTCCCCGCCCCAGCCCTCTCTTCCTCTTCCTCTTCACCTCCCGACGATATCTCTCTGTTTCTTCAACAGATTTTGCGGCGTTCCTCTTCCTCTGCTCCTCACTTCTCTCTTCTCTCTCCCTCTCCCTCCATCTTTTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACCTTCCCCCTCCATACGGACCGCCCAATGCAGTGCCGGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCTAATTCCCCATCATCCGGTGTACTACATGATCCCTTGCGCACTTTTCCCACATCCATTCCACCCAACGCGTCTTCTACGTCGGTCGGAGCTAGTGATCATAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCTGCCTACAAAGCCCAATCCTCGCAGCTCTTCCAAGAGAAGCAGAGCCGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAAGCGCTGCAAAATCTGATCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTAGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTTTGCAATATCTCCAACTTTCTCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCTAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGCTGAAACTCCATTTGAATTGGTCCCGCCCATCCAGGCTCACCTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAATCTAAGGAGATTTGCAGCAGAGATTTACTGCGAGATGATCACCAGGCGGTGAATGTGAATGTGAGCCAATCGGAGACAACTCCCTTAGTATCATGCCCCTATAACATACCAGAGACTCCTGATTTACAAGGATTACAGAATGGCCTCTCAGTGGAACCGTGCATCATTGAAGGAAATCGGTCTGGCGTGCTTCTGAATTACACCCCAGAGCACAGCCTCGTATTCCCTTCCCCTTTTAATGGCATCAAACAAGAAGACCGACTGAAACAATAG 1248 47.84 MDHSVPNNCDRNACSSSTWTLPAPALSSSSSSPPDDISLFLQQILRRSSSSAPHFSLLSPSPSIFSELTCNIRAFTPPTHNLPPPYGPPNAVPDEISAVDSSEQFANSPSSGVLHDPLRTFPTSIPPNASSTSVGASDHNENDEFDCESEEGLEALVEELPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKAASIHPFMSDIGRTNAAETPFELVPPIQAHLVPFYLSESSKSKEICSRDLLRDDHQAVNVNVSQSETTPLVSCPYNIPETPDLQGLQNGLSVEPCIIEGNRSGVLLNYTPEHSLVFPSPFNGIKQEDRLKQ* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25541506 25544586 - CsaV3_6G043370.1 Csa06g02951 534578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02951 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Csa06g02951 415 Gene3D - 169 233 IPR036638 GO:0046983
Csa06g02951 415 PANTHER TRANSCRIPTION FACTOR SPATULA 28 346 - -
Csa06g02951 415 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Csa06g02951 415 MobiDBLite consensus disorder prediction 170 186 - -
Csa06g02951 415 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 28 346 IPR031066 -
Csa06g02951 415 MobiDBLite consensus disorder prediction 122 186 - -
Csa06g02951 415 CDD bHLH_AtPIF_like 174 236 - -
Csa06g02951 415 Coils Coil 213 233 - -
Csa06g02951 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
Csa06g02951 415 MobiDBLite consensus disorder prediction 123 138 - -
Csa06g02951 415 SMART finulus 180 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02185 Csa-Chr4:22635255 Csa06g02951 Csa-Chr6:25541506 1.91E-31 dispersed
Csa06g02106 Csa-Chr6:18737868 Csa06g02951 Csa-Chr6:25541506 1.45E-09 dispersed
Csa06g02951 Csa-Chr6:25541506 Csa07g01462 Csa-Chr7:14980031 8.91E-33 dispersed
Csa02g01934 Csa-Chr2:18154564 Csa06g02951 Csa-Chr6:25541506 3.81E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32124 PF00010 HLH 4.90E-14 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02951 - - csv:101217594 765.377