Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02953 ATGGGGTGCGACGCTTTCTCTCGGTTAACTAAAACAAGCCCACCCAACAAAACCAAAACAAAAATACTTCTAACTCAGACATCCTTTCCAAAAGGCACAAGGAAAAAAAAAATGTGGGATCTGAACGATTGGCCTGATGTAAGGGAGGAGGATGAATGTTCCTCCGCCAAGACATCCATTGAAGGTGAAGGAGATGAGGAAAAAGGGAAAAGAGTGGGATCGCTTTCCAATTCAAGCTCTTCCGCTGTGGTTATGGAAGAAGAGGAAGCCGAAGTCGAAGGTGGTTCCGATGAAGAGGAACCCACCCCCATGGTTACTCACCAGTTTTTCCCACTCGAAGAAACTGAAATCCCAACTCCCCTTCCACATGCTTCTGCCCCTCCCGCTACCGCTCCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCATCCCGATCCTCTCGCCGCCCTTCCTAATAATTCTTTAACCCCCACCGACCTCTCTCACCCCATTAAAAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATTTGGGATTGTGGAAAGCAAGTCTATCTCGGTGGATTCGATACAGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGGGTAGAAGCAGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAGCAGATGGGAAATCTAACAAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTCCCCAGAGGGAGCTCCAAATATAGAGGCGTTACGCTTCATAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATTTGGGTTTGTTTGATACGGAGATTGAAGCAGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGACCCCAGCATCTACGAGAATGAACTGAATCCGACAACTGAATCAAGTAGCAATTTGGGGGATCATAGTCTTGATTTAAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATAATGGTTCCATAGGTCCACAACACCATTCTTCTTCTTCTTCTTCAGCTGATTGGCAACGCAATCACGGATTTAGGCCTCTTCAGCTAAATTTGGAAAATGGAGGAGGTGGAAACAAGAATTACAATAATAATGTAGAGAGAAGGAATAGATACCTGGAGAGTGAAACCATGCAGCTGCTGAGCCAAACACACATTCAATCTCCAGCTCAATTCAGCCGCCCGCACACGGTCGGTGGTGCACCAGATCATCACCCCCACTCCCAGATATTGCTTCACAATCACAATAATCAAACCTTCAATTATCAAATTGAGTTTTCAGGCAGCAGTAATGGTCATGGAGGCCGAATAGTAGGAAGTGATCTAACATTATCTTTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAAGTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTTATGAGACCCTCTTGA 1614 46.65 MGCDAFSRLTKTSPPNKTKTKILLTQTSFPKGTRKKKMWDLNDWPDVREEDECSSAKTSIEGEGDEEKGKRVGSLSNSSSSAVVMEEEEAEVEGGSDEEEPTPMVTHQFFPLEETEIPTPLPHASAPPATAPAFPRAHWVGVKFAHPDPLAALPNNSLTPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTESSSNLGDHSLDLSLGNSSSKQNDSSNNGSIGPQHHSSSSSSADWQRNHGFRPLQLNLENGGGGNKNYNNNVERRNRYLESETMQLLSQTHIQSPAQFSRPHTVGGAPDHHPHSQILLHNHNNQTFNYQIEFSGSSNGHGGRIVGSDLTLSLNDHLQSGPSQVLASAAASSGFAPQIRPSKNWLHNNGFHCLMRPS* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25565842 25571657 - CsaV3_6G043390.1 Csa06g02953 534580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02953 537 MobiDBLite consensus disorder prediction 155 180 - -
Csa06g02953 537 MobiDBLite consensus disorder prediction 33 72 - -
Csa06g02953 537 MobiDBLite consensus disorder prediction 336 388 - -
Csa06g02953 537 PRINTS Ethylene responsive element binding protein signature 273 284 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 PRINTS Ethylene responsive element binding protein signature 311 331 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 38 517 - -
Csa06g02953 537 ProSiteProfiles AP2/ERF domain profile. 180 236 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 SUPERFAMILY DNA-binding domain 271 331 IPR016177 GO:0003677
Csa06g02953 537 CDD AP2 271 331 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 CDD AP2 180 235 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 MobiDBLite consensus disorder prediction 9 32 - -
Csa06g02953 537 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 38 517 - -
Csa06g02953 537 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677
Csa06g02953 537 ProSiteProfiles AP2/ERF domain profile. 272 329 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 SMART rav1_2 180 242 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 SMART rav1_2 272 335 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 MobiDBLite consensus disorder prediction 1 103 - -
Csa06g02953 537 Pfam AP2 domain 180 228 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 Pfam AP2 domain 271 320 IPR001471 GO:0003700|GO:0006355
Csa06g02953 537 Gene3D AP2/ERF domain 179 238 IPR036955 GO:0003700|GO:0006355
Csa06g02953 537 Gene3D AP2/ERF domain 271 330 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01423 Csa06g02953 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03241 Csa-Chr3:29729628 Csa06g02953 Csa-Chr6:25565842 7.02E-91 dispersed
Csa04g01425 Csa-Chr4:14237172 Csa06g02953 Csa-Chr6:25565842 1.34E-90 dispersed
Csa06g01688 Csa-Chr6:14811535 Csa06g02953 Csa-Chr6:25565842 1.54E-94 dispersed
Csa06g02953 Csa-Chr6:25565842 Csa02g01870 Csa-Chr2:17788116 1.34E-09 dispersed
Csa02g01423 Csa-Chr2:13663874 Csa06g02953 Csa-Chr6:25565842 6.32E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32125 PF00847 AP2 3.80E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02953 K09284 - csv:101214724 973.0