Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02954 ATGGACGGCGGAGGAGTACCAGAAGCTACCAGAAAAAGATCAGCCCTCGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGCTCTTACTCCTCTCCTGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGCCCTTCTGCCAGGCTTAATTTTCCCGAGTTGTTGGCAGGGGAAGGCCGTGGAATTACCGCCGGCGCCGGGGATATGTCGGCGGCTTCTATACGGAAGAAAGCCACGGAGGTTGGGGCAAGAGTGGATGCTCTGGAGAGTTCCGTAGGTCAACAGAGTCGGAGCCATCATTCCCACGCATCGGCATCTCCGCCAGAGACGAAAGGGTGCAGTGGGTTCTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGTGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 55.36 MDGGGVPEATRKRSALDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGITAGAGDMSAASIRKKATEVGARVDALESSVGQQSRSHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25584512 25587595 - CsaV3_6G043400.1 Csa06g02954 534581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02954 173 MobiDBLite consensus disorder prediction 114 173 - -
Csa06g02954 173 MobiDBLite consensus disorder prediction 115 134 - -
Csa06g02954 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 4 159 - -
Csa06g02954 173 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Csa06g02954 173 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Csa06g02954 173 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Csa06g02954 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 4 159 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01422 Csa06g02954 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02438 Csa-Chr4:24520725 Csa06g02954 Csa-Chr6:25584512 2.03E-51 dispersed
Csa06g01994 Csa-Chr6:17955495 Csa06g02954 Csa-Chr6:25584512 3.25E-25 dispersed
Csa06g02954 Csa-Chr6:25584512 Csa05g03184 Csa-Chr5:31560805 1.18E-24 dispersed
Csa01g03015 Csa-Chr1:26272725 Csa06g02954 Csa-Chr6:25584512 4.72E-23 transposed
Csa02g01930 Csa-Chr2:18124218 Csa06g02954 Csa-Chr6:25584512 2.62E-45 wgd
Csa02g01422 Csa-Chr2:13655334 Csa06g02954 Csa-Chr6:25584512 1.89E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32126 PF00847 AP2 2.40E-11 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02954 K09286 - csv:101214481 320.087