Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02957 ATGAACCCAAACCTTCCCACATTTCTTCCTTCTCCTTCACTTTTCTGTTCTTTTCTTCTCTTTTTTCCCTTCTTTACTTCCGCCTCTGGGTTTGACTTTCAAATTCCGCCGGAAGACTTACTGCTGCCCTCCGACGCCGTTTCTCTTCTTTCCTTCAAGTCCAAAGCCGACTTGAACAACAAGCTTCTTTACACTCTTAATGAACGCTTTGATTACTGCCAATGGCAGGGTGTGAAGTGCGTTCAGGGTCGTGTTGTTCGACTGGTTCTTCAATCCTTTGGTCTCCGAGGGACATTGGCTCCAAATACAGTGTCTCAGCTCGACCAGCTTCGGATTCTCAGCCTGCATAATAACTCTCTCGAAGGACCCATTCCGGACTTATCCAGACTCTTCAATCTTAAATCTCTGTTTCTTGGACGAAACTCCTTCGTTGGGTCATTTCCGCCGTCGATTCTTACTCTTCATCGGCTTCAGACTCTTGATCTTTCCTATAATAGGTTTACGGGTCCACTCCCGGTGAGGCTTTCCTCCTTGGACCGGCTCATTACTCTTCGGCTCGAATGGAATGGTTTCAATGGAAGTATTCCTCCTCTAAATCAGTCATTCCTTGAGGTCCTCAATGTCACGGGGAACAACCTGACCGGACAAATTCCAGTTACCCCTACTCTGTCGCGTTTCAACACGTCGTCGTTTTTCTGGAACCCAGATCTCTGTGGGGAGATCGTTAACAAGGCATGTCATTCACCCGCTCCGTTCTTTGAAACTTCCAATGCCACTCCGCCACCTTCTATCCCTTCCGTCCAAAGCGCACAGTCACAGGACGTACTTTTCTCTCCAGTTACTCATGCTAAGCACAAAGAAACCGGTATGATTTTGGGGCTTTCAGTCGGCGCTGCAGTTTTAGTAGCCGGTGTTTTATGTTTCTATGTAGCTGCTAGAACCCAAAGAAGTCAAACTACGTCGAAGCGGGCAATGCCGCAGTTCGAAACCGAAACTAATTTTTCCACAGCTTCCGCAATGAACGACCGACTCGAGGGGAAGGGCGAATTTATAGCCAAAGTGAAAGGAAGTGAAGAAATGCAAAAAACCCATAAGAGTGGTAATCTTATATTTTGTGAAGGGGAAGCAGAATTATTCAACTTAGAGCAGTTAATGAGGGCTTCGGCCGAGCTGCTCGGCAGAGGCACAATGGGAACTACATACAAAGCAGTGCTCTGCAACCAGCTCATCGTAACGGTGAAACGTCTTGACGCTACTAAGACCGCTACGACCAGCAGCGAAGTGTTCGACCGGCATTTGGGAGCAGTGGGTGCCCTTCGTCATCCTAATTTGGTACCAGTTAGGGCATATTTCCAAGCGAAGGGAGAGAGACTAGTGGTGTACGATTACCAACCTAATGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCAAGGGCTAAGCCTTTACACTGGACATCATGCTTGAAGATTGCAGAAGACTTAGCTCAGGGCATTGCCTATATTCATCAAGCTTCGAGGTTAATCCATGGCAACTTAAAGTCTAGTAATGTTCTTCTTGGTGCAGAGTTTGAGGCCTGTCTCACAGACTATGGCCTTTCTGCTCTGGCAGAGGCCTATGAAGATCCAGATTGTTCACGGTACCATGCCCCTGAAACTCGCAAGTCGAGCCGGAATGCAACACAGAAGAGCGATGTCTATGCGTACGGCGTCCTTTTGCTTGAGCTTTTGACAGGAAGACATCCTGCACACCATCCATTTCTTGAGCCAACTGACATGCCAGAATGGGTGAGAGTAGTTAGAGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTAGCTAGCATCTGCAGTACTACATCGCCGGAACAGAGGCCAGCCATGTGGCAAGTTTTGAAGATGATACTGGAGATTAAAGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTTTAA 1974 47.42 MNPNLPTFLPSPSLFCSFLLFFPFFTSASGFDFQIPPEDLLLPSDAVSLLSFKSKADLNNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGTLAPNTVSQLDQLRILSLHNNSLEGPIPDLSRLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNRFTGPLPVRLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVLNVTGNNLTGQIPVTPTLSRFNTSSFFWNPDLCGEIVNKACHSPAPFFETSNATPPPSIPSVQSAQSQDVLFSPVTHAKHKETGMILGLSVGAAVLVAGVLCFYVAARTQRSQTTSKRAMPQFETETNFSTASAMNDRLEGKGEFIAKVKGSEEMQKTHKSGNLIFCEGEAELFNLEQLMRASAELLGRGTMGTTYKAVLCNQLIVTVKRLDATKTATTSSEVFDRHLGAVGALRHPNLVPVRAYFQAKGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASRLIHGNLKSSNVLLGAEFEACLTDYGLSALAEAYEDPDCSRYHAPETRKSSRNATQKSDVYAYGVLLLELLTGRHPAHHPFLEPTDMPEWVRVVREDDGGDSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMTEDSESSGF* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25603384 25607389 - CsaV3_6G043430.1 Csa06g02957 534584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02957 657 SUPERFAMILY L domain-like 47 239 - -
Csa06g02957 657 Gene3D Phosphorylase Kinase; domain 1 352 463 - -
Csa06g02957 657 SUPERFAMILY Protein kinase-like (PK-like) 390 644 IPR011009 -
Csa06g02957 657 Gene3D Ribonuclease Inhibitor 200 249 IPR032675 -
Csa06g02957 657 ProSiteProfiles Protein kinase domain profile. 386 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02957 657 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 653 - -
Csa06g02957 657 Gene3D Ribonuclease Inhibitor 43 199 IPR032675 -
Csa06g02957 657 Gene3D Transferase(Phosphotransferase) domain 1 465 655 - -
Csa06g02957 657 Pfam Protein kinase domain 389 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g02957 657 ProSiteProfiles Leucine-rich repeat profile. 109 131 IPR001611 GO:0005515
Csa06g02957 657 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 16 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01191 Csa-Chr5:12337268 Csa06g02957 Csa-Chr6:25603384 8.59E-147 dispersed
Csa06g02957 Csa-Chr6:25603384 Csa03g03364 Csa-Chr3:30424877 3.07E-103 dispersed
Csa06g02957 Csa-Chr6:25603384 Csa01g02093 Csa-Chr1:18117705 4.45E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78416 PF00069 Pkinase 1.80E-30 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02957 - - csv:101214244 1269.22