Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02959 ATGGCCGTGGACCTCATCTCCCACCTTTCCCCACTCCCCACTATGGAACCCAACGCCGTCCAAGAAGCCACTTCCGGCCTCGAAAGCGTCCACAAACTCATCCGATTACTCTCCATTCCCAATCCCCATTCCTTACCTTCCTCCACTCAATCCCCAATCGATTTCCCTACCGACTGCCGTGCCGCCGCCGACGCTGCCGTCTCCAAGTTTAAAAAGGTCATTTCCCTCCTCGGCCGTAGTCGTCTCGGCCACGCTCGCTTCCGCAGAGCTCCTCTGCCTCAACAACCTCATTACGTTACTCCCATCCAGCAGATCCCACCCCATCCCCATCTTAATAACAACAACAACATCAACGACGAATCTCTTAATTTCTCCGCTCATAATTCCTTCATTTCTTCGTTGACTGGCGACGCCGATACCAAACATCCTTCTTCCTCTTCCTCGCCTTTTCTCATTTCCAACCTGTCCCAGGTCTCCTCTGCTGGGAAGCCCCCTCTTTCTAGTTCTTCCCTTAAGAGGAAGTGCAGCTCCGAAAACTTGAGATCCGGCAAGTGCGCGGCTGCTTCTTCCTCTTCTCGATGTCACTGTTCCAAGAAGAGAAAATTGAGGGTGAAGAGAGTGGTGAGAGTTCCGGCAATAAGCTTGAAAATGGCGGACATCCCACCGGACGATTATTCATGGAGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTAAGAGGTTGTCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTGGTGACTTACGAAGGAGAACACAATCACACCCTCTCTCTCCCCGAAACCTCTACTCTCATCCTCGAGTCCTCATAG 885 52.2 MAVDLISHLSPLPTMEPNAVQEATSGLESVHKLIRLLSIPNPHSLPSSTQSPIDFPTDCRAAADAAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYVTPIQQIPPHPHLNNNNNINDESLNFSAHNSFISSLTGDADTKHPSSSSSPFLISNLSQVSSAGKPPLSSSSLKRKCSSENLRSGKCAAASSSSRCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSLPETSTLILESS* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25618485 25621280 - CsaV3_6G043450.1 Csa06g02959 534586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02959 294 SMART WRKY_cls 221 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02959 294 Pfam WRKY DNA -binding domain 223 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02959 294 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 11 294 - -
Csa06g02959 294 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 294 IPR044810 GO:0003700
Csa06g02959 294 Pfam Plant zinc cluster domain 172 219 IPR018872 -
Csa06g02959 294 MobiDBLite consensus disorder prediction 97 119 - -
Csa06g02959 294 Gene3D WRKY domain 209 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa06g02959 294 MobiDBLite consensus disorder prediction 91 119 - -
Csa06g02959 294 ProSiteProfiles WRKY domain profile. 216 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa06g02959 294 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04408 Csa-Chr3:38433423 Csa06g02959 Csa-Chr6:25618485 2.09E-12 dispersed
Csa06g02959 Csa-Chr6:25618485 Csa07g01660 Csa-Chr7:17076064 6.69E-56 dispersed
Csa07g01448 Csa-Chr7:14754543 Csa06g02959 Csa-Chr6:25618485 3.15E-16 dispersed
Csa01g02192 Csa-Chr1:19017073 Csa06g02959 Csa-Chr6:25618485 1.65E-69 transposed
Csa02g02744 Csa-Chr2:23904722 Csa06g02959 Csa-Chr6:25618485 6.13E-108 transposed
Csa04g02431 Csa-Chr4:24478962 Csa06g02959 Csa-Chr6:25618485 1.24E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32127 PF03106 WRKY 3.60E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02959 - - csv:101214001 520.776