Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02964 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACAGTTGATAACCAAAGTAGTAAAGTAGATAATTTGACATCTATTTTATCTACGTCCGGCATATCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAAAAAATGATGACTCTAACCCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTTAGTAGCGGATTTGGATTCCAGATACCTACAATGTCTTCTGTACAAGGTGATGGCGCTGCAGACACCAAATCTGGGATGAAATCTGGTGTATTTGAATCATTAACAAAAGGTTTAGTCGACACATCTCAGAATGCGGTAAAGGCTATGCAAGTAAAGGCACGCCATATGGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATTTGACGTACATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTCTCTTCGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACCCATCATAAGGGAAAATACAAAGTTTACAATCTTTGTTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCTTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATACATGGTTGAAGGAGGATATCGAGAACGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCACCAGAAGCAATTGACTATTACAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGCATTTTGAGCGCATTTTAACACAATTCAACGGAAAAACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCAACAAAAAAGCATCAGAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAGGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCAGGGGACTTCAAGATTCATTTTCATGAACGGCATGGGGATTTTTACTGTTGGTTAAACACAACAATGACCGAAAACAAAGTTTTATTAAGTGACACGGATCTTGATGGTTTTGATAAGAGAAAACTCCCAACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAGCACGATTGAAAACTGATTCAGCTGGCAAAGGATCCGATCGTCGCTCTATTCACAATCGAGCCTCGGATCATGAAGCAGGACAATCCAACTCAAACAAAATGTCCGAAGGTGAAGAAAACGATGACAATGTATTCTCTGATAGTGACGAAGAAAATGGTGACATAAAAACCAGTCTAACTCGATCAACTTCTGGAAATGGAAATGGAAATTCAAAAGCTGACCATTCATCAACAACAATTTCCTCTGAAAGAATTGGGAGTTTAGCTCATGAAACTAGTCATTTATCCTTCGGAAATGAGAAAAACTCACAACCTAATGCTTCAAAAGGACCTGCCGTGATACAACCATCAGGCCTTGAGATCCCAAATTTGGATTCAGTAAGAGCAAGTGATTTCAAGGCAATAGCTGCTGATGCGTCAGTTTTCACGTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1824 40.19 MDNGTSNSSTQSAVNNSAPTVDNQSSKVDNLTSILSTSGISSWAKSFRNPQPPEAAKNDDSNPGNSGMSAIARFSSGFGFQIPTMSSVQGDGAADTKSGMKSGVFESLTKGLVDTSQNAVKAMQVKARHMVSQNKRRYQEGEFDLDLTYITENIIAMGFPAGHMSSGLFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYTWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSPEAIDYYNQKRCVDGKALVLPSQIRYVKHFERILTQFNGKTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKKHQKTKDLMPEDFWIRAPRKGFVVFALPGEPGLTELSGDFKIHFHERHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPARLKTDSAGKGSDRRSIHNRASDHEAGQSNSNKMSEGEENDDNVFSDSDEENGDIKTSLTRSTSGNGNGNSKADHSSTTISSERIGSLAHETSHLSFGNEKNSQPNASKGPAVIQPSGLEIPNLDSVRASDFKAIAADASVFTFGDEEDFDSE* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25642802 25647507 + CsaV3_6G043500.1 Csa06g02964 534591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02964 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 252 262 IPR016130 GO:0016311|GO:0016791
Csa06g02964 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 607 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 43 68 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 458 536 - -
Csa06g02964 607 CDD PTP_PTEN 146 311 IPR045101 GO:0016791
Csa06g02964 607 SMART PTEN_C2_2 320 448 IPR014020 -
Csa06g02964 607 Gene3D Protein tyrosine phosphatase superfamily 121 318 IPR029021 -
Csa06g02964 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 250 289 IPR000387 GO:0016311|GO:0016791
Csa06g02964 607 MobiDBLite consensus disorder prediction 548 571 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 511 536 - -
Csa06g02964 607 ProSiteProfiles C2 tensin-type domain profile. 322 449 IPR014020 -
Csa06g02964 607 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 607 - -
Csa06g02964 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 149 314 IPR029021 -
Csa06g02964 607 MobiDBLite consensus disorder prediction 461 476 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 548 565 - -
Csa06g02964 607 ProSiteProfiles Phosphatase tensin-type domain profile. 136 315 IPR029023 -
Csa06g02964 607 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03804 Csa-Chr3:33600225 Csa06g02964 Csa-Chr6:25642802 3.81E-43 dispersed
Csa06g02964 Csa-Chr6:25642802 Csa04g02634 Csa-Chr4:25716565 1.76E-07 dispersed
Csa06g02964 Csa-Chr6:25642802 Csa07g00734 Csa-Chr7:5208981 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02964 K01110 - csv:101213277 1229.54