Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02964 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACAGTTGATAACCAAAGTAGTAAAGTAGATAATTTGACATCTATTTTATCTACGTCCGGCATATCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAAAAAATGATGACTCTAACCCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTTAGTAGCGGATTTGGATTCCAGATACCTACAATGTCTTCTGTACAAGGTGATGGCGCTGCAGACACCAAATCTGGGATGAAATCTGGTGTATTTGAATCATTAACAAAAGGTTTAGTCGACACATCTCAGAATGCGGTAAAGGCTATGCAAGTAAAGGCACGCCATATGGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATTTGACGTACATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTCTCTTCGGATTCCTTGAGGGATTTTACAGAAATCATATGGAAGAAGTGATCAAATTTTTTGAAACCCATCATAAGGGAAAATACAAAGTTTACAATCTTTGTTCAGAGCGTTTGTATGATGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCTTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATCATTTTGTCAAAGTGCATATACATGGTTGAAGGAGGATATCGAGAACGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCACCAGAAGCAATTGACTATTACAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGCATTTTGAGCGCATTTTAACACAATTCAACGGAAAAACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCAAATCACAGTGAGATTTTGTTCTCAACAAAAAAGCATCAGAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAGGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCAGGGGACTTCAAGATTCATTTTCATGAACGGCATGGGGATTTTTACTGTTGGTTAAACACAACAATGACCGAAAACAAAGTTTTATTAAGTGACACGGATCTTGATGGTTTTGATAAGAGAAAACTCCCAACTCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAGCACGATTGAAAACTGATTCAGCTGGCAAAGGATCCGATCGTCGCTCTATTCACAATCGAGCCTCGGATCATGAAGCAGGACAATCCAACTCAAACAAAATGTCCGAAGGTGAAGAAAACGATGACAATGTATTCTCTGATAGTGACGAAGAAAATGGTGACATAAAAACCAGTCTAACTCGATCAACTTCTGGAAATGGAAATGGAAATTCAAAAGCTGACCATTCATCAACAACAATTTCCTCTGAAAGAATTGGGAGTTTAGCTCATGAAACTAGTCATTTATCCTTCGGAAATGAGAAAAACTCACAACCTAATGCTTCAAAAGGACCTGCCGTGATACAACCATCAGGCCTTGAGATCCCAAATTTGGATTCAGTAAGAGCAAGTGATTTCAAGGCAATAGCTGCTGATGCGTCAGTTTTCACGTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1824 40.19 MDNGTSNSSTQSAVNNSAPTVDNQSSKVDNLTSILSTSGISSWAKSFRNPQPPEAAKNDDSNPGNSGMSAIARFSSGFGFQIPTMSSVQGDGAADTKSGMKSGVFESLTKGLVDTSQNAVKAMQVKARHMVSQNKRRYQEGEFDLDLTYITENIIAMGFPAGHMSSGLFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKSFCQSAYTWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSPEAIDYYNQKRCVDGKALVLPSQIRYVKHFERILTQFNGKTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTKKHQKTKDLMPEDFWIRAPRKGFVVFALPGEPGLTELSGDFKIHFHERHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPARLKTDSAGKGSDRRSIHNRASDHEAGQSNSNKMSEGEENDDNVFSDSDEENGDIKTSLTRSTSGNGNGNSKADHSSTTISSERIGSLAHETSHLSFGNEKNSQPNASKGPAVIQPSGLEIPNLDSVRASDFKAIAADASVFTFGDEEDFDSE* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25642802 25647507 + CsaV3_6G043500.1 Csa06g02964 534591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02964 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 252 262 IPR016130 GO:0016311|GO:0016791
Csa06g02964 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 607 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 43 68 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 458 536 - -
Csa06g02964 607 CDD PTP_PTEN 146 311 IPR045101 GO:0016791
Csa06g02964 607 SMART PTEN_C2_2 320 448 IPR014020 -
Csa06g02964 607 Gene3D Protein tyrosine phosphatase superfamily 121 318 IPR029021 -
Csa06g02964 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 250 289 IPR000387 GO:0016311|GO:0016791
Csa06g02964 607 MobiDBLite consensus disorder prediction 548 571 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 511 536 - -
Csa06g02964 607 ProSiteProfiles C2 tensin-type domain profile. 322 449 IPR014020 -
Csa06g02964 607 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 607 - -
Csa06g02964 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 149 314 IPR029021 -
Csa06g02964 607 MobiDBLite consensus disorder prediction 461 476 - -
Csa06g02964 607 MobiDBLite consensus disorder prediction 548 565 - -
Csa06g02964 607 ProSiteProfiles Phosphatase tensin-type domain profile. 136 315 IPR029023 -
Csa06g02964 607 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02964 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101213277 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03804 Csa-Chr3:33600225 Csa06g02964 Csa-Chr6:25642802 3.81E-43 dispersed
Csa06g02964 Csa-Chr6:25642802 Csa04g02634 Csa-Chr4:25716565 1.76E-07 dispersed
Csa06g02964 Csa-Chr6:25642802 Csa07g00734 Csa-Chr7:5208981 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1015 . . . Bda10g00247 . . . Bma15g00872 . Cmo07g00697 . . . . Sed14g0873 Cpe19g00640 . Bhi03g00963 Tan03g1590 Cmetu04g1134 . Hepe04g1268 . . Cla01g01668 Cam01g1749 Cec04g1397 Cco04g1461 Clacu01g1774 Cmu01g1654 Cre04g1330 . . Cone8ag0143 Cone12ag0143 Lsi01g00954 Csa06g02964 . Cme08g00594 . . . . . . . . . . . . Cma07g00685 . Car07g00682 . . . . . . . . . . . . . . . . . . Chy02g00892 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83