Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02975 ATGCAAATTTACTCTCTCCTTTACCTATTTCTCTCCCTTATCTCTCTCCTCTTCGCTTTCAACCTCCGCACCCGCCGTACAAACTTACCCCCCAGTCCCCCGTCTCTCCCTATCATCGGCCACCTCCATTACCTCAAAATCCCCCATCACCAAACTTTACACAAACTCTCTGCGCAATACGGACCAGTAATCTCTCTCTGGCTTGGATCTCGCCTCGTTGTGGTCGTCTCCTCGTTGCCGGCAGTGGAGGAGTGTTTCACTAAGAACGACATTGTTTTAGCCAACCGTCCTCGCTTGCTAGTCGGGAAACACATCAGCTACAACTACACTACGATGGTATCGTCACCTTATGGAGATCACTGGCGGAACCTCCGCAGAATCGGCGCGATCGAGATCTTTTCAGCGTCTCGCCTCAATAAATTCGCAGGAAGCCGGAAGGATGAAGTGGAACGGTTACTGAAGAAGCTATCGAGAAATTCGATGTATGGATTCTCGAAAGTAGAGATGCAGTCGGCGATTTCGGAACGGACGTTTAACATATCGATGAGAATGGCGGCAGGAAAGAGGTATTTTGGTGAGGAGGTGAGGGATGTGGAGGAAGCGAGACAGTCGAGAGAGCTGATTAAACAGATCGTGTCGATGGGAGGAGTATCGTATCCGGGAGATTTCATTCCGATGATGAATTGGATCCCGAATGGATTTAAGAGGAAGGTTTGGAGAGTTGCGAAGAGGATGGACGCGTTTCTGCAGGGATTGATTGATGAACATCGGAGCAATAAGGAAGAAGAAAGGAACACGGTGATCGGTCATTTGCTATCTCTGCAGGAAATGGAGCCTGAGTACTATGGAGATGAAATAATCAAAGGAATTGTTCTGTTACTACTAGCAGGAGTAGACACTTCAGCTGTGACAATTGAATGGATTCTAGCTCATTTGCTCAACAATCCAGATGTACTAAAAAAGGCTAGAGAAGAGATAGACGCTCAAATTGGAGAAAAACGACTTGTAGAAGAATCGGATATCCCCAAGTTACCATATCTTCAAGGAATCATCTCTGAGACTCTTCGATTGAACCCAACTGCTCCAATGCTAGTGCCACATCTAACCTCCCATGATTGTACAATCAGCGGGTACAAAATACCACGTGACACAATTGTATTGGTTAATGCATGGGCTATCCATAGAGACCCTAATCAATGGGAAGAACCCATGCTATTCAAACCGGAAAGACACCAAAAGTCATCAGAATCAATTGATCACCATCAAATCCCAAAGTTGATTCCATTTGGAGTCGGACGAAGAGCTTGCCCTGGCTCGGGCATGGCTCAACGAGTGGTGGGATTGACTCTAGCGGCTTTAATTCAATGCTACGAGTGGGAAAGGATTGGTGAGGAGAAAGTGGACATGGCAGAAGGAAGAGGGGCCACCATGCCCAAGGTGTTGCCATTGGAAGCTATGTGCAAACCTCGCTCTATCATCCACAACATTTTTAACTGA 1497 46.83 MQIYSLLYLFLSLISLLFAFNLRTRRTNLPPSPPSLPIIGHLHYLKIPHHQTLHKLSAQYGPVISLWLGSRLVVVVSSLPAVEECFTKNDIVLANRPRLLVGKHISYNYTTMVSSPYGDHWRNLRRIGAIEIFSASRLNKFAGSRKDEVERLLKKLSRNSMYGFSKVEMQSAISERTFNISMRMAAGKRYFGEEVRDVEEARQSRELIKQIVSMGGVSYPGDFIPMMNWIPNGFKRKVWRVAKRMDAFLQGLIDEHRSNKEEERNTVIGHLLSLQEMEPEYYGDEIIKGIVLLLLAGVDTSAVTIEWILAHLLNNPDVLKKAREEIDAQIGEKRLVEESDIPKLPYLQGIISETLRLNPTAPMLVPHLTSHDCTISGYKIPRDTIVLVNAWAIHRDPNQWEEPMLFKPERHQKSSESIDHHQIPKLIPFGVGRRACPGSGMAQRVVGLTLAALIQCYEWERIGEEKVDMAEGRGATMPKVLPLEAMCKPRSIIHNIFN* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25719827 25723848 - CsaV3_6G043610.1 Csa06g02975 534602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02975 498 SUPERFAMILY Cytochrome P450 30 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 Coils Coil 319 339 - -
Csa06g02975 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 429 438 IPR017972 GO:0005506|GO:0016705
Csa06g02975 498 PRINTS E-class P450 group I signature 436 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 426 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 4 495 - -
Csa06g02975 498 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 4 495 - -
Csa06g02975 498 Gene3D Cytochrome P450 19 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 Coils Coil 139 159 - -
Csa06g02975 498 Pfam Cytochrome P450 30 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS P450 superfamily signature 436 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS P450 superfamily signature 427 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02975 498 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g02975 Csa-Chr6:25719827 Csa06g02977 Csa-Chr6:25728642 0 dispersed
Csa06g02975 Csa-Chr6:25719827 Csa06g02976 Csa-Chr6:25725649 0 tandem
Csa04g02454 Csa-Chr4:24605411 Csa06g02975 Csa-Chr6:25719827 6.46E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02975 K13260 - csv:101215922 951.814