Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02977 ATGGAAATTTCTTCTCTGCTTTACCTATTTCTCTCTCTTATCTCTCTTCTCTTCGCTTTCAACCTCCGCAGCCGACGTAGAAACTTACCCCCCAGTCCCCCGTCTCTCCCCATCATTGGCCACCTCCATTATATCAAAATCCCCCTCCACCGAACTTTACACAAACTCTCTGCAAAATATGGACCAGTAATCTCTCTCTGGTTTGGGTCTCGCCTCGTTGTGGTCGTCTCGTCGTTGCCGGCAGTGGAGGAGTGCTTCACTAAGAACGATATCGTTTTAGCCAACCGTCCTCGGTTGCTAGTCGGCAAACACGTCGGCTACAACCACACTACAATGGTAGCGTCACCTTACGGAGACCACTGGCGGAACCTCCGCCGAATCGGAGCCATCGAGATTTTTTCAGCGTCTCGCCTCAATAAGTTCGCAGGAACCCGGAAGGATGAAGTGGAAAGGTTACTGAAGAAGCTATCGAGGAATTCGATGTATGGATTCTCGAAAGTAGAGATGCAATCGTCGATTTCAGAACTGACGTTTAACATATCGATGAGGATGGCGGCCGGAAAGAGGTATTTCGGTGAGGAAGTGAGGGATGTGGAGGAAGCGAGACAGTCGAGAGAGCTGATTAAACAGATCGTGTCGATGGGAGGAGTATCGAATCCGGGAGATTTCATTCCGATGATGAATTGGATCCCGAATGGATATAAGAGGAAGGTTTCGAGACTTGCGAAGAGGATGGACGGGTTTTTGCAGGGATTGATTGATGAACATCGGAGCAATAAGGAAGAAGAAAGGAACACAATGATCGATCATTTGCTATCTCTGCAGGAAACGGAGCCTGAGTACTATGGAGATCAAATAATCAAAGGAATCATTCTGGTGTTACTACTAGCCGGAACAGACACATCAGCGGTGACAATTGAATGGGCTTTAGCTCACTTGCTCAACAATCCGGAGGTACTAAAAAAGGCTAGAGAAGAGCTAGACACTCAAATTGGAGAAAAACGACTAGTGGAAGAATCAGACGTCTCCAAGTTACCATATCTTCAAGGAATCATCTCCGAGACTCTTCGATTGAACCCAGCTGCTCCAATGCTAGTGCCACATCTAACCTCCAATGATTGTACAATTAGTGGATACAAAATACCACGTGACACGATTGTATTGGTTAATGCATGGGCTATCCATAGAGACCCTAATCAATGGGAAGAACCCACACTATTCAAACCAGAAAGACACCAAAAGTCAGAATCAATTGATCATCATATTTCAAAGTTGATCCCATTTGGAGTCGGACGACGAGCTTGCCCCGGCTCGGGCATGGCTCAACGAGTGGTGGGGTTGACTCTGGCGGCGCTAATTCAATGCTACGAGTGGGAAAGGATTGGTGACGAGAAAGTGGACATGTCGGAAGGAAGAGGCGTCACTATGCCCAAGATGGTGCCACTGGAAGCCATGTGCAAACCTCGCCCTATCATCCACAACATTTTTAACTAA 1494 47.19 MEISSLLYLFLSLISLLFAFNLRSRRRNLPPSPPSLPIIGHLHYIKIPLHRTLHKLSAKYGPVISLWFGSRLVVVVSSLPAVEECFTKNDIVLANRPRLLVGKHVGYNHTTMVASPYGDHWRNLRRIGAIEIFSASRLNKFAGTRKDEVERLLKKLSRNSMYGFSKVEMQSSISELTFNISMRMAAGKRYFGEEVRDVEEARQSRELIKQIVSMGGVSNPGDFIPMMNWIPNGYKRKVSRLAKRMDGFLQGLIDEHRSNKEEERNTMIDHLLSLQETEPEYYGDQIIKGIILVLLLAGTDTSAVTIEWALAHLLNNPEVLKKAREELDTQIGEKRLVEESDVSKLPYLQGIISETLRLNPAAPMLVPHLTSNDCTISGYKIPRDTIVLVNAWAIHRDPNQWEEPTLFKPERHQKSESIDHHISKLIPFGVGRRACPGSGMAQRVVGLTLAALIQCYEWERIGDEKVDMSEGRGVTMPKMVPLEAMCKPRPIIHNIFN* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25728642 25732288 - CsaV3_6G043630.1 Csa06g02977 534604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02977 497 Pfam Cytochrome P450 30 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 494 - -
Csa06g02977 497 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS P450 superfamily signature 350 361 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 6 494 - -
Csa06g02977 497 SUPERFAMILY Cytochrome P450 30 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 349 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02977 497 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Csa06g02977 497 Coils Coil 320 340 - -
Csa06g02977 497 Coils Coil 493 497 - -
Csa06g02977 497 Gene3D Cytochrome P450 19 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02725 Csa-Chr2:23708458 Csa06g02977 Csa-Chr6:25728642 0 dispersed
Csa02g02726 Csa-Chr2:23716685 Csa06g02977 Csa-Chr6:25728642 0 dispersed
Csa06g02975 Csa-Chr6:25719827 Csa06g02977 Csa-Chr6:25728642 0 dispersed
Csa06g02977 Csa-Chr6:25728642 Csa06g02979 Csa-Chr6:25742453 0 proximal
Csa06g02976 Csa-Chr6:25725649 Csa06g02977 Csa-Chr6:25728642 0 tandem
Csa02g01911 Csa-Chr2:18031935 Csa06g02977 Csa-Chr6:25728642 7.58E-162 wgd
Csa04g02458 Csa-Chr4:24622685 Csa06g02977 Csa-Chr6:25728642 3.66E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02977 K13260 - csv:101211829 955.666