Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g02979 ATGGATTTAGACACTTACGTCCTCTATTCTTCTCTCTCACTTTTCTTTCTTCTTCTTGCTTTCAAATTCATCTCTCGATCTCTTCGACTTCGCAATAACTTACCGCCAAGTCCACCCTCTTTTCCGGTCATCGGACATCTCCATCTCTTGAAAAAGCCAATCCACCGAACTTTCAGCAACCTCTCTGCCAAATATGGCCCTGTTATGTCTCTCCGCCTTGGATCCAAGCTTGCAGTCGTTTTATCCTCCTCGGCGGCGGTGGAGGACTGCTTCACTAAAAACGACGTTGTTCTCGCCAACCGTCCACGTTTGCTCGTTGGAAAATACATCGGCTATAATTACACTACCATGATTGGGGCTCCATACGGCGACCATTGGCGGAACCTTCGTCGAATTGGCGCCATTGAGATCTTCTCTATATCTCGAATCAACAAATTCACGGACATCCGAAGGGATGAAGTGATGCGAATTGTTCGAAAACTGTCACATAATTCGATTCATCAATTCTCGAAAGTAGAAATTCAATCGGCGATGTCGGAGCTGACGTTCAACATCACGATGAGAATGGCGGCTGGTAAAAGGTATTATGGCGAGGACGTGACGAATGAGGAAGAGGCGAGGAGGTTTAGGGAGTTGATTAAAGAGATTGTGGCGGTAGGAGGAGTATCAAATCCAGGGGATTTCTTACCTGTATTGAATTGGATGTCGAAGGGTATTGAGAGGAAATTAATACAACTGGGGAAGAAAGTGGATGCGTTCTTGCAAGGGCTAATTGATGACCATCGTAAGACGAAGGAAGAAGGAAGGAACACGATGATCGATCACTTGCTTTCTCTACAACAATCGGAACCCGATCACTATAACGATCAGATAATCAAAGGATTTATATTGATATTACTAACGGCTGGATCCGACACATCCGCGGTGACAATGGAATGGGCCTTGAGTCATCTCCTAAACAATCCTCAAGTGTTAAAAAAGGCAAAAGAGGAGATAGACACTCAAATTGGACAAGAAAGACTCGTGGAGGAATCAGACATTTCTAAACTACCTTATCTTCAAAGAATCGTCTCTGAGACTCTTAGGTTGAATCCTGCGGCACCCATGTTGGTTCCCCATTATGCAACCAATGACTGCAAAATATGTGGGTATGATGTGCCACGAGACACAATGGTACTAGTCAATGCTTGGGCCATACATAGAGATTCAAACGAGTGGGAGGATTGCATGAGTTTTAAACCAGAGCGATACGAAAAATCAGAAGCTGTAGAGATACACAAGTTTTTGCCTTTTGGATTAGGAAGGCGTGCATGTCCTGGTTCTGCCATGGCACATAGAGTGATGGGTCTTACTTTAGCAACTCTGATTCAATGTTTTGAGTGGAAGAAAATTGGAGAAGAAGACATTGACATGAAGGAGTTGTCTGGTGCCATAATGACCAAGATGGTGCCATTGGAGGCCATGTGCAAAGCTCGACCCATCATCAACAACATTTTTTACTAA 1503 44.18 MDLDTYVLYSSLSLFFLLLAFKFISRSLRLRNNLPPSPPSFPVIGHLHLLKKPIHRTFSNLSAKYGPVMSLRLGSKLAVVLSSSAAVEDCFTKNDVVLANRPRLLVGKYIGYNYTTMIGAPYGDHWRNLRRIGAIEIFSISRINKFTDIRRDEVMRIVRKLSHNSIHQFSKVEIQSAMSELTFNITMRMAAGKRYYGEDVTNEEEARRFRELIKEIVAVGGVSNPGDFLPVLNWMSKGIERKLIQLGKKVDAFLQGLIDDHRKTKEEGRNTMIDHLLSLQQSEPDHYNDQIIKGFILILLTAGSDTSAVTMEWALSHLLNNPQVLKKAKEEIDTQIGQERLVEESDISKLPYLQRIVSETLRLNPAAPMLVPHYATNDCKICGYDVPRDTMVLVNAWAIHRDSNEWEDCMSFKPERYEKSEAVEIHKFLPFGLGRRACPGSAMAHRVMGLTLATLIQCFEWKKIGEEDIDMKELSGAIMTKMVPLEAMCKARPIINNIFY* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25742453 25744708 - CsaV3_6G043650.1 Csa06g02979 534606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g02979 500 SUPERFAMILY Cytochrome P450 35 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 Gene3D Cytochrome P450 21 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 496 - -
Csa06g02979 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Csa06g02979 500 Pfam Cytochrome P450 35 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g02979 500 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED 8 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02727 Csa-Chr2:23724960 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa04g02453 Csa-Chr4:24601161 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa04g02454 Csa-Chr4:24605411 Csa06g02979 Csa-Chr6:25742453 2.62E-172 dispersed
Csa06g00754 Csa-Chr6:6103772 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa06g00756 Csa-Chr6:6111799 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa06g02976 Csa-Chr6:25725649 Csa06g02979 Csa-Chr6:25742453 0 dispersed
Csa06g02977 Csa-Chr6:25728642 Csa06g02979 Csa-Chr6:25742453 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g02979 K13260 - csv:101215449 956.051