Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03007 ATGGGTCGTTTCAATCTCATCGTTACACTCTCTCTTCTTTCTCTCTTTCTCTTCTTCCCTTCCCCAACGCTCGCCCAACTTCGACAAAATTTCTACGCCAACATTTGTCCCAATGTCGAAAACATTGTCCGCTCTGAAGTTACCAAAAAATTTCAACAAACTTTCGTCACTGTTCCAGCCACTCTTCGCCTCTTCTTCCACGATTGCTTTGTTCAGGGATGTGATGCCTCTGTAATTATTGCTTCCACCGCATCCAACAAGGCCGAGAAAGACCATCCCGATAACCTCTCCCTCGCTGGAGATGGATTCGATACCGTCATTAAAGCTAAAGCTGCCCTCGACGCCATTCCTCAATGCCGAAACAGAGTCTCCTGTGCCGATATTCTCGCTTTAGCCACCCGTGATGTCATCGCATTGTCCGGCGGACCGTCGTACGCGGTGGAGCTAGGAAGATTAGACGGTCTGGTTTCTAAAGCCTCGGACGTGAACGGTAGACTCCCAGCACCGACCTTCAATCTGAATCAGCTGAATTCTCTATTTGCAGCGAATGGCCTCACGCAACAAGACATGATCGCTCTCTCAGCCGCTCACACCGTCGGATTCTCACACTGTGGCAAATTCTCGAATCGAATCTACACCTTTGCCCCTGGGAGACAAGTCGACCCTACACTAAACCGAACCTATGCAACGCAGCTACAAGCGATGTGCCCCAAGAATGTGGACCCGAGGGTGGCGATTAACATGGACCCAATCACCCCCAGAGCGTTTGACAACGTTTACTTTAGAAATTTACAGCAAGGAATGGGTCTGTTCACGTCAGACCAGGTTCTATTCAGCGACCGGCGATCAAGACCCACAGTGGACACGTGGGCTAGAGACTCAAAAGCTTTTAATAAAGCTTTTATTGAAGCTATGACTAAGTTGGGGCGGGTCGGGGTGAAGACCGGTAGGAATGGTAATATTCGGCGCGATTGTGGAGCGTTTAATTGA 990 49.49 MGRFNLIVTLSLLSLFLFFPSPTLAQLRQNFYANICPNVENIVRSEVTKKFQQTFVTVPATLRLFFHDCFVQGCDASVIIASTASNKAEKDHPDNLSLAGDGFDTVIKAKAALDAIPQCRNRVSCADILALATRDVIALSGGPSYAVELGRLDGLVSKASDVNGRLPAPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFSNRIYTFAPGRQVDPTLNRTYATQLQAMCPKNVDPRVAINMDPITPRAFDNVYFRNLQQGMGLFTSDQVLFSDRRSRPTVDTWARDSKAFNKAFIEAMTKLGRVGVKTGRNGNIRRDCGAFN* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25927418 25929541 + CsaV3_6G043930.1 Csa06g03007 534634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03007 329 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Csa06g03007 329 Pfam Peroxidase 43 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 ProSiteProfiles Plant heme peroxidase family profile. 26 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Csa06g03007 329 Gene3D Peroxidase, domain 2 167 308 - -
Csa06g03007 329 Gene3D - 30 329 - -
Csa06g03007 329 PANTHER PEROXIDASE 1 329 - -
Csa06g03007 329 CDD secretory_peroxidase 26 328 IPR033905 GO:0004601|GO:0042744
Csa06g03007 329 SUPERFAMILY Heme-dependent peroxidases 26 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g03007 329 PANTHER - 1 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02591 Csa-Chr2:22576715 Csa06g03007 Csa-Chr6:25927418 1.14E-132 dispersed
Csa02g02592 Csa-Chr2:22580320 Csa06g03007 Csa-Chr6:25927418 3.17E-146 dispersed
Csa03g04402 Csa-Chr3:38393105 Csa06g03007 Csa-Chr6:25927418 2.71E-148 dispersed
Csa05g02926 Csa-Chr5:29698277 Csa06g03007 Csa-Chr6:25927418 5.35E-95 dispersed
Csa02g01414 Csa-Chr2:13518309 Csa06g03007 Csa-Chr6:25927418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03007 K00430 - csv:101206860 650.588