Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03008 ATGAGTAATAAAAACCAAATCACTACCACGACGGGTCCGTTTCGAAATAGGAGGCCATGGCCTGGATTATTCCCTTGTTCCTCCAAAGCTTTGGGAACTTGCTTGGGTGATGCTAATTGTATGGAACAATTATTAGTCCATTGTGCCAATGCTATTGAATCCAACGACGCTACTCTGGCTCAACAAATCCTTTGGGTCCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGCTTAACTTCAGCTTTCTTACGCGCTCTCATCACACGCGCCACCAACACTGGCAACTGTAAGATTCTTGCTGCAATAACCACCGCATTCTCCTCTTCCATCACTACACATACCTTCTCTCTCATGGACCTTGCCGCCTTCGTGGACTTAACCCCTTGGCATCGCTTCGGCTTCACCGCTGCCAATGTTGCGATTCTGGACGCCATCGAGGGTTACTCCGCGGTACACGTTGTTGATTTGAGCTTGATGCATTGCATGCAAATCCCAACATTAATCGACGCCATTGCTACACGGTTCGAGGTCCCTCCATTACTGAAACTGACTACTGTAGCTGTTGTTGCCGTAAAAGAGGCGTCGCCAATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTCGCAAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCGTCTTGTCATACAGACGGTTTCGCTCGTTTAATCGAACAAATCCGTGTACAACATTTAATTTACGGACCTGAAAATAACGAAGCACTCGTTTTTAATTGTCATATGATGCTTCATTACATCCCTGAAGAAACCTTAAACCCAAACCCAAACCCATCTCCTAATTTCGACATCTCGTCGTCTTCCTCTTCCATTCGTTCCATGTTTCTCAAGGCAGTCCGTAGCTTAGATCCAACGATTGTGGTTTTAGTAGACGAAGATGCGGATTTCACCTCAACCAAGTTGGTTACGCGATTGAGATCGGCGTTTAACTATCTGTGGATTCCTTACGACTCCATGGATTCGTTTCTTCCTCGAAGCAGCAAACAGAGAGAATGGTATGAAGCGGATATCTGTTGGAAGATTGAGAATGTAATTGCTCATGAAGGGGTTCAGCGAGTTCAGAGATTGGAGCCAAAGGGGCGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGGTTCCGTTTGTGGAGGAGGCGGTTTCAGAGGTGAAGACGATGCTTGATGAGCATGCAGCGGGATGGGGATTGAAGAAGGAAGAGGACCACCTGCTGCTGACGTGGAAAGGCCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTGCTAA 1335 47.42 MSNKNQITTTTGPFRNRRPWPGLFPCSSKALGTCLGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALITRATNTGNCKILAAITTAFSSSITTHTFSLMDLAAFVDLTPWHRFGFTAANVAILDAIEGYSAVHVVDLSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKEASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFARLIEQIRVQHLIYGPENNEALVFNCHMMLHYIPEETLNPNPNPSPNFDISSSSSSIRSMFLKAVRSLDPTIVVLVDEDADFTSTKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGVQRVQRLEPKGRWVQRMVNAKFRGVPFVEEAVSEVKTMLDEHAAGWGLKKEEDHLLLTWKGHDVVFATAWVPC* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25935402 25936736 - CsaV3_6G043940.1 Csa06g03008 534635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03008 444 Pfam GRAS domain family 41 441 IPR005202 -
Csa06g03008 444 PANTHER SCARECROW-LIKE PROTEIN 32 14 442 - -
Csa06g03008 444 ProSiteProfiles GRAS family profile. 32 442 IPR005202 -
Csa06g03008 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 442 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03008 Csa-Chr6:25935402 Csa07g00389 Csa-Chr7:2879139 2.27E-119 dispersed
Csa06g03008 Csa-Chr6:25935402 Csa06g00941 Csa-Chr6:7561913 4.13E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32129 PF03514 GRAS 8.00E-91 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03008 - - csv:101213756 843.573