Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03011 ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGTGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGATACCTCCGAAGCTCAAGGTCACGCCACTGTATTCGTCGCTAAGTTCTTTGGCCGTGCCGGTCTTATGTCATTCATATCTGCTGTACCTGAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCTTGCGGACGCACCGTGAATCCCGTTAACGGTGCTGTTGGTCTTCTCTGGACTGGGAACTGGCACGTTTGTCAGGCTGCCGTCGATACTGTCTTACGAGGCGGTACGTTGCGGCCGATCAATGATTTCCTTGCTGCTGGATCCCCTAATCTGGCCTCCGACGACACTTCCGAGACGGAAGTAGGATGTACCGACATGTGGAAGATACGAGATTCTTATCCTAATTCTCGATTCTCCAACTCCCGATCTAGGCTCTCGCCGAAGCGCAAGCGGTCCGAGGAAGCATCCACTAAGCACCAACTGAACGACCTAGATCTCCGCTTGACTCCCACTTTTCCAGCCAAATCAACCCTCCGCGCCGCTACGCCGTCCATGAATTCGGAGGAATCCGAGACCACAACATGCTTCGAGAGCGGCCTCGGTGATAATCACCACCATCATTATCCAGAAGAAGGAGTCGCTCAACGGAAACTTCTCAATTTGTTCGTCTAA 702 51.71 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSETEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEEASTKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHHYPEEGVAQRKLLNLFV* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25950641 25951903 - CsaV3_6G043970.1 Csa06g03011 534638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03011 233 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Csa06g03011 233 MobiDBLite consensus disorder prediction 156 170 - -
Csa06g03011 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 233 - -
Csa06g03011 233 MobiDBLite consensus disorder prediction 146 170 - -
Csa06g03011 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 233 - -
Csa06g03011 233 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00381 Csa-Chr1:2368012 Csa06g03011 Csa-Chr6:25950641 6.20E-50 dispersed
Csa05g02614 Csa-Chr5:27325928 Csa06g03011 Csa-Chr6:25950641 3.21E-49 dispersed
Csa06g03011 Csa-Chr6:25950641 Csa06g01663 Csa-Chr6:14608411 3.65E-11 dispersed
Csa04g02468 Csa-Chr4:24675485 Csa06g03011 Csa-Chr6:25950641 6.36E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32130 PF03195 LOB 3.30E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03011 - - csv:101206615 453.751