Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03022 ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAGTAATCCATACCATCCTCCTCACCCATCCTCTACCACCACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGCTCATTCGAATCCACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCGAAGCTACATATAGTCGATATTAGCAATACATATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACTACCAAGCCGAGCGGTGGGACCGGAGCTGCGGCTTCCCAGAAAGTAATGAAGGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCCGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTTCGTAGTTTACGGCCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGCGTTGATGGAATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCAAGGACGAGTAATGAGCGATTGATGCTGGAGAGAGCAGCCGGTAGGGCAATCGTCGACCTAGTGGCTTGTTCGGCGGCGGAATCAGTTGAGAGGCGGGAAACAGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1473 47.86 MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSSSSNSRQYYNSNPYHPPHPSSTTTPTPPLDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26029860 26032658 - CsaV3_6G044080.1 Csa06g03022 534649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03022 490 MobiDBLite consensus disorder prediction 57 75 - -
Csa06g03022 490 Pfam GRAS domain family 111 489 IPR005202 -
Csa06g03022 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
Csa06g03022 490 MobiDBLite consensus disorder prediction 10 43 - -
Csa06g03022 490 ProSiteProfiles GRAS family profile. 99 489 IPR005202 -
Csa06g03022 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Csa06g03022 490 MobiDBLite consensus disorder prediction 57 89 - -
Csa06g03022 490 MobiDBLite consensus disorder prediction 10 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01459 Csa-Chr2:14029729 Csa06g03022 Csa-Chr6:26029860 0 dispersed
Csa06g00684 Csa-Chr6:5597567 Csa06g03022 Csa-Chr6:26029860 6.32E-151 dispersed
Csa06g03022 Csa-Chr6:26029860 Csa07g00389 Csa-Chr7:2879139 2.87E-58 dispersed
Csa07g02359 Csa-Chr7:21792019 Csa06g03022 Csa-Chr6:26029860 4.63E-42 dispersed
Csa06g03022 Csa-Chr6:26029860 Csa06g00941 Csa-Chr6:7561913 8.86E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32133 PF03514 GRAS 7.30E-105 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03022 - - csv:101204711 922.154