Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03023 ATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGGGCTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTTGAGGATCCTGTATGTACTGCGGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGGAAGTATGGGAAAAATCCTGTTACTGGAGCTGCCCTGAAGCAGGAGGAACTAATTCCGCTGACTTTCCATAAGAACTCTGAAGGCGAGTTTCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAGTTAAAGAATTAAATATCAAAACGAAAAACTGGAAGGAACTACTCACTGATGAATCATTTTGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCGCTCGATAGTAAGGTTCTCCTGGATTTTGATCACGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTTCAGGAACTTGGAACCGAAAAAGGAAGGGAAACTGCACTTCATGGGGGAGGTGGTGGCAAAGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCGCGCATTAAAGAGAATTCCAAAGAGAATGGAAAAGGAGAGGAGAAACCTAAGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGATAGGGCACCAGTAAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTATGATCCTGTTACAAAAAATGAACATGAATATATCAAGGTCGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTGCACCAAGGGCATGTGAGAATTTCATTACACTTTGTGAAAATGGTTACTACAATGGAGTTGCTTTCCATAGAAATATTAGGAATTTTATGATTCAAGGCGGTGATCCAACTGGTACTGGGAGAGGCGGTGAATCTATATGGGGAAAGCCCTTCAATGATGAGCTTAACTCCAAGCTGGTTCATTCTGGACGGGGCGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTTTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACTGTATTTGGCAGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCCGTCGATGACAACGATCGGCCTCTGGAAGAGATCAAGATAACAAACGTCGCTGTCTTTGTGAATCCATATTCAGAACCTGATGAAGAGGAAGAAAAGCAGAAAGACGAAAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGGTCATGGTATAGTAACCCTGGCACCGGTGTAGCTGAAGACGGAGCTGCTGGTGGTGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAATCCAAACCCCTTGCTGTTGATGCTAGTCTAAAACAAAATACCTCAACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA 1779 42.89 MGKKQHSKDRLFITKTEWATEWGGAKSKGSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAALKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDESFCREDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRETALHGGGGGKAQKERAAALAAILAARSRIKENSKENGKGEEKPKQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCENGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFNDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGSVVGGLTALAAMEKVPVDDNDRPLEEIKITNVAVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPLAVDASLKQNTSTKKRTAAGEFKDFSSW* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26036788 26041380 - CsaV3_6G044090.1 Csa06g03023 534650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03023 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 MobiDBLite consensus disorder prediction 508 530 - -
Csa06g03023 592 MobiDBLite consensus disorder prediction 505 592 - -
Csa06g03023 592 Coils Coil 508 528 - -
Csa06g03023 592 CDD cyclophilin_RING 350 508 - -
Csa06g03023 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Csa06g03023 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Csa06g03023 592 SUPERFAMILY Cyclophilin-like 350 516 IPR029000 -
Csa06g03023 592 Gene3D - 328 515 IPR029000 -
Csa06g03023 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Csa06g03023 592 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Csa06g03023 592 SUPERFAMILY RING/U-box 37 104 - -
Csa06g03023 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Csa06g03023 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Csa06g03023 592 MobiDBLite consensus disorder prediction 566 580 - -
Csa06g03023 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Csa06g03023 592 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Csa06g03023 592 Pfam U-box domain 39 91 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03444 Csa-Chr3:30954353 Csa06g03023 Csa-Chr6:26036788 2.11E-50 dispersed
Csa04g02556 Csa-Chr4:25186013 Csa06g03023 Csa-Chr6:26036788 2.94E-43 dispersed
Csa06g03023 Csa-Chr6:26036788 Csa07g01677 Csa-Chr7:17231880 5.13E-32 dispersed
Csa07g01188 Csa-Chr7:11663383 Csa06g03023 Csa-Chr6:26036788 2.76E-33 dispersed
Csa06g03023 Csa-Chr6:26036788 Csa02g01199 Csa-Chr2:11781859 6.94E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03023 K10598 - csv:101204462 1107.43