Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03023 | ATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGGGCTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTTGAGGATCCTGTATGTACTGCGGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGGAAGTATGGGAAAAATCCTGTTACTGGAGCTGCCCTGAAGCAGGAGGAACTAATTCCGCTGACTTTCCATAAGAACTCTGAAGGCGAGTTTCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAGTTAAAGAATTAAATATCAAAACGAAAAACTGGAAGGAACTACTCACTGATGAATCATTTTGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCGCTCGATAGTAAGGTTCTCCTGGATTTTGATCACGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTTCAGGAACTTGGAACCGAAAAAGGAAGGGAAACTGCACTTCATGGGGGAGGTGGTGGCAAAGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCGCGCATTAAAGAGAATTCCAAAGAGAATGGAAAAGGAGAGGAGAAACCTAAGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGATAGGGCACCAGTAAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTATGATCCTGTTACAAAAAATGAACATGAATATATCAAGGTCGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTGCACCAAGGGCATGTGAGAATTTCATTACACTTTGTGAAAATGGTTACTACAATGGAGTTGCTTTCCATAGAAATATTAGGAATTTTATGATTCAAGGCGGTGATCCAACTGGTACTGGGAGAGGCGGTGAATCTATATGGGGAAAGCCCTTCAATGATGAGCTTAACTCCAAGCTGGTTCATTCTGGACGGGGCGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTTTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACTGTATTTGGCAGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCCGTCGATGACAACGATCGGCCTCTGGAAGAGATCAAGATAACAAACGTCGCTGTCTTTGTGAATCCATATTCAGAACCTGATGAAGAGGAAGAAAAGCAGAAAGACGAAAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGGTCATGGTATAGTAACCCTGGCACCGGTGTAGCTGAAGACGGAGCTGCTGGTGGTGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAATCCAAACCCCTTGCTGTTGATGCTAGTCTAAAACAAAATACCTCAACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA | 1779 | 42.89 | MGKKQHSKDRLFITKTEWATEWGGAKSKGSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAALKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDESFCREDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRETALHGGGGGKAQKERAAALAAILAARSRIKENSKENGKGEEKPKQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCENGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFNDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGSVVGGLTALAAMEKVPVDDNDRPLEEIKITNVAVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPLAVDASLKQNTSTKKRTAAGEFKDFSSW* | 593 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26036788 | 26041380 | - | CsaV3_6G044090.1 | Csa06g03023 | 534650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03023 | 592 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 354 | 501 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | MobiDBLite | consensus disorder prediction | 508 | 530 | - | - | |
Csa06g03023 | 592 | MobiDBLite | consensus disorder prediction | 505 | 592 | - | - | |
Csa06g03023 | 592 | Coils | Coil | 508 | 528 | - | - | |
Csa06g03023 | 592 | CDD | cyclophilin_RING | 350 | 508 | - | - | |
Csa06g03023 | 592 | CDD | RING-Ubox_PPIL2 | 38 | 110 | IPR026951 | - | |
Csa06g03023 | 592 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 385 | 402 | IPR020892 | GO:0003755|GO:0006457 | |
Csa06g03023 | 592 | SUPERFAMILY | Cyclophilin-like | 350 | 516 | IPR029000 | - | |
Csa06g03023 | 592 | Gene3D | - | 328 | 515 | IPR029000 | - | |
Csa06g03023 | 592 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 364 | 379 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 390 | 402 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 433 | 448 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 448 | 460 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 461 | 476 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | IPR013083 | - | |
Csa06g03023 | 592 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842|GO:0016567 | |
Csa06g03023 | 592 | SUPERFAMILY | RING/U-box | 37 | 104 | - | - | |
Csa06g03023 | 592 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 350 | 500 | IPR002130 | GO:0000413|GO:0003755 | |
Csa06g03023 | 592 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842|GO:0016567 | |
Csa06g03023 | 592 | MobiDBLite | consensus disorder prediction | 566 | 580 | - | - | |
Csa06g03023 | 592 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 590 | IPR044666 | - | |
Csa06g03023 | 592 | PANTHER | RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 | 2 | 590 | - | - | |
Csa06g03023 | 592 | Pfam | U-box domain | 39 | 91 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03444 | Csa-Chr3:30954353 | Csa06g03023 | Csa-Chr6:26036788 | 2.11E-50 | dispersed | |
Csa04g02556 | Csa-Chr4:25186013 | Csa06g03023 | Csa-Chr6:26036788 | 2.94E-43 | dispersed | |
Csa06g03023 | Csa-Chr6:26036788 | Csa07g01677 | Csa-Chr7:17231880 | 5.13E-32 | dispersed | |
Csa07g01188 | Csa-Chr7:11663383 | Csa06g03023 | Csa-Chr6:26036788 | 2.76E-33 | dispersed | |
Csa06g03023 | Csa-Chr6:26036788 | Csa02g01199 | Csa-Chr2:11781859 | 6.94E-33 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03023 | K10598 | - | csv:101204462 | 1107.43 |