Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03028 ATGGAAAGGTTTTTGGAGGAGAATTTTAGTGGCGTCAAACCTAAAAACTCGTCGGAAGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGTGTTGTCAAGAACCCCAAAAGAAGGTTTCGATTCACTGCTAATCTCTCTAAGCGTGGGGAAGCTGCTGCTATGCGCCAGAATAATCAGGAAAAGTTGAGGATTGCAGTTTTAGTCTCAAAAGCTGCGTTTCAATTCATCCAAGGTGTGCAACCAAGTGACTATACTGTTCCGGAGGAAGTCAAAGCTGCAGGTTTTCATATTTGTGCCGATGAACTTGGGTCTGTTGTTGAAGGCCATGATACAAAGAAGTTTAAATATCATGGTGGGGTTGAAGGGATTGCTCAGAAGCTCTGTACATCAACAACAAATGGACTTACTGGTGATGCCGATGCACTCAATCATAGGCAAGGGATTTATGGAGTAAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTTGTGTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATTCTTGGACTCTGTGCTTTTGTCTCTTTGGTGGTTGGCATAATAACGGAAGGATGGCCACATGGAGCTCACGATGGCCTTGGAATTGTTGCTAGTATCTTATTAGTTGTGTTTGTCACAGCAACTAGTGATTACAGACAATCCCTGCAGTTCAAGGACTTGGATAAGGAGAAAAAAAAGATATCAATTCAGGTTACAAGGAACAGTTATAGACAGAAAATGTCAATCTATGACTTACTTCCTGGAGATATTGTTCACCTGTCGATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGCTTGACGGGAGAAAGTGAGCCAGTGATGGTGACAGCAGAAAACCCCTATCTTCTTTCTGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGACGAAACTCCATTGCAGGTGAAATTAAATGGGGTGGCAACAATTATTGGGAAAATTGGTCTTTTCTTTGCAGTCATCACTTTCGCTGTGTTAGTTCAAGGAATGCTTAGCCGTAAAATTCGAGAAGGGACTCACTGGAGCTGGTCAGCAGATGATGCATTAGAGGTATTGGAATTCTTTGCTGTTGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGCCTTCCTTTGGCTGTGACGTTAAGTCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCACTCGTCCGTCACTTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGCAGTGACAAAACTGGAACAATCACCACAAATCGCATGACAGTAGTCAAGTCATGCATTTGCATGAATGTCAAGGAATCATGTAATAATGCATCAGATTTCTCTTCTGACCTTCCATCCTCTGTTGTCAAACTTCTGCTGCAATCCATATTCAACAACACTGGAGGAGAAGTTGTAATCAACCAAAGTGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGAGGAGATTTTCAGGCTGAAAGACAGGCAGGTAAACTTATTAAAGTGGAGCCGTTCAACTCTTTGAAAAAGCGAATGGGTGTTGTCCTACAATTTCCTGAAGGCGGTTACCGTGCACACACGAAAGGGGCTTCAGAAATAGTACTAGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAATCTTCCATCAAGCATCTCAATGTTATTATCAATCAATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATCCTATTCCAGGTTCTGGTTATACCTGTATAGGTATAGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTGAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATAACTGTACGAATGGTTACTGGTGACAATATCAATACTGCGAAAGCTATTGCTAGGGAATGTGGAATTCTCACAGATGATGGTATAGCTATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAACTGCTTAAAATTATTCCGAAAATCCAGGTGATGGCTCGATCTTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTAGTTGCAGTTACTGGTGATGGGACAAACGATGCTCCCGCACTTCACGAAGCAGATATTGGACTGGCAATGGGCATCGCTGGAACTGAGGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACCGTTGGAAAATGGGGTCGTTCCGTTTACATAAACATTCAAAAATTTGTGCAATTCCAGCTGACTGTTAACATAGTGGCGTTGATTGTAAACTTCTCGTCAGCTTGTTTGACAGGTAGTGCTCCTCTTACTGCAGTCCAACTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCATTGGCTCTCGCTACCGAGCCTCCAACTGATGAATTGATGAAGCGGTTACCTGTCGGGAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGTCAGTCCTTTTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGGAAATCAACTTTCGGTCTCGACGGCCCTGATTCTGATCTGATACTGAATACTCTCATCTTCAATTCATTCGTGTTCTGTCAGATTTTCAACGAAATAAGTTCAAGGGAGATGGACAAAATCGATGTGTTCAAAGGAATACTTGATAACTATGTGTTTGTTGCTGTTCTTGGTTCCACCGTCATCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCAAGCACAACTCCTCTGAGTATGTCGCAGTGGACGTTCAGCTTGGTGATCGGATTTCTAGGAATGCCAATTGCTGCTTTCTTGAAGACAATTGCAGTATAA 3045 43.09 MERFLEENFSGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSVVEGHDTKKFKYHGGVEGIAQKLCTSTTNGLTGDADALNHRQGIYGVNKFAESEQRSFFVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNSYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLVQGMLSRKIREGTHWSWSADDALEVLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESCNNASDFSSDLPSSVVKLLLQSIFNNTGGEVVINQSGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGYRAHTKGASEIVLAACDKVINSSGEVVPLDESSIKHLNVIINQFAGEALRTLCLAYMELENGFSVNDPIPGSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDELMKRLPVGRRGSFISNVMWRNILGQSFYQFSVIWFLQAKGKSTFGLDGPDSDLILNTLIFNSFVFCQIFNEISSREMDKIDVFKGILDNYVFVAVLGSTVIFQIIIIEFLGTFASTTPLSMSQWTFSLVIGFLGMPIAAFLKTIAV* 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26063517 26068480 + CsaV3_6G044140.1 Csa06g03028 534655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03028 1014 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Csa06g03028 1014 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Csa06g03028 1014 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Csa06g03028 1014 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Csa06g03028 1014 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Csa06g03028 1014 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03028 1014 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03028 1014 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03028 1014 Pfam E1-E2 ATPase 237 431 - -
Csa06g03028 1014 Gene3D - 168 1011 - -
Csa06g03028 1014 Pfam Cation transport ATPase (P-type) 513 591 - -
Csa06g03028 1014 SFLD p-type atpase 435 805 IPR044492 -
Csa06g03028 1014 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1012 IPR023298 -
Csa06g03028 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 719 837 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03028 1014 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa06g03028 1014 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Csa06g03028 1014 PANTHER CALCIUM-TRANSPORTING ATPASE 1 7 1013 - -
Csa06g03028 1014 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Csa06g03028 1014 Gene3D - 17 77 - -
Csa06g03028 1014 Gene3D - 450 798 IPR023214 -
Csa06g03028 1014 PANTHER CATION TRANSPORTING ATPASE 7 1013 - -
Csa06g03028 1014 SUPERFAMILY HAD-like 452 858 IPR036412 -
Csa06g03028 1014 Pfam haloacid dehalogenase-like hydrolase 737 793 - -
Csa06g03028 1014 Gene3D - 463 657 IPR023299 GO:0000166
Csa06g03028 1014 SFLD Haloacid Dehalogenase 435 805 - -
Csa06g03028 1014 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 112 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa06g03028 1014 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Csa06g03028 1014 Gene3D - 140 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01391 Csa-Chr5:14841551 Csa06g03028 Csa-Chr6:26063517 0 dispersed
Csa06g03028 Csa-Chr6:26063517 Csa07g02289 Csa-Chr7:21300958 0 dispersed
Csa01g02737 Csa-Chr1:24260554 Csa06g03028 Csa-Chr6:26063517 1.88E-46 transposed
Csa03g03769 Csa-Chr3:33403928 Csa06g03028 Csa-Chr6:26063517 0 transposed
Csa02g01881 Csa-Chr2:17868741 Csa06g03028 Csa-Chr6:26063517 9.54E-86 wgd
Csa04g02477 Csa-Chr4:24733875 Csa06g03028 Csa-Chr6:26063517 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03028 K01537 - csv:101212315 1976.44