Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03031 ATGGGTGCCCCTAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCGGGAAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCATAAAACATCATGATAATCTTGTGCCTGTAAGCACTGTGCTTCCAAATGAGGAGATCGTTGACGCTAAGCCACTTGCGATTTCAAATGGAACAAGTCGCTCCAATGGTCCGAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGCCCCCGTCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATACACCATTGTTGCTCCTTGAGGATAAGCAGACGGATTCTTCAAAAACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCGGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 43.37 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDNLVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWPPSNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQDNKTLQ* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26076654 26083890 - CsaV3_6G044170.1 Csa06g03031 534658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03031 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Csa06g03031 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Csa06g03031 308 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Csa06g03031 308 Gene3D - 118 191 IPR036388 -
Csa06g03031 308 CDD SANT_TRF 6 57 - -
Csa06g03031 308 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Csa06g03031 308 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Csa06g03031 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Csa06g03031 308 SMART sant 4 59 IPR001005 -
Csa06g03031 308 Gene3D - 2 59 - -
Csa06g03031 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Csa06g03031 308 Coils Coil 240 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03031 K09422 MYBP; transcription factor MYB, plant - csv:101202913 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03031 Csa-Chr6:26076654 Csa03g04064 Csa-Chr3:35570090 1.81E-36 dispersed
Csa06g01113 Csa-Chr6:9228120 Csa06g03031 Csa-Chr6:26076654 7.03E-07 transposed
Csa04g00018 Csa-Chr4:139643 Csa06g03031 Csa-Chr6:26076654 2.30E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g00018 . 1 329 Single Myb Histone (SMH) Gene Family AT1G49950 58.3 1.5e-74 276.6
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.2 2.5e-61 232.6
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 52.4 1.4e-64 243.4
Csa06g03031 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 3.7e-57 218.8
Csa03g04064 . 1 273 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 9.5e-66 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32135 PF00538 Linker_histone 2.60E-11 CL0123 Csa TF