Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03031 ATGGGTGCCCCTAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCGGGAAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCATAAAACATCATGATAATCTTGTGCCTGTAAGCACTGTGCTTCCAAATGAGGAGATCGTTGACGCTAAGCCACTTGCGATTTCAAATGGAACAAGTCGCTCCAATGGTCCGAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGCCCCCGTCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATACACCATTGTTGCTCCTTGAGGATAAGCAGACGGATTCTTCAAAAACCGAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCGGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 43.37 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDNLVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWPPSNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNTPLLLLEDKQTDSSKTEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQDNKTLQ* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26076654 26083890 - CsaV3_6G044170.1 Csa06g03031 534658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03031 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Csa06g03031 308 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Csa06g03031 308 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Csa06g03031 308 Gene3D - 118 191 IPR036388 -
Csa06g03031 308 CDD SANT_TRF 6 57 - -
Csa06g03031 308 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Csa06g03031 308 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Csa06g03031 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Csa06g03031 308 SMART sant 4 59 IPR001005 -
Csa06g03031 308 Gene3D - 2 59 - -
Csa06g03031 308 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Csa06g03031 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Csa06g03031 308 Coils Coil 240 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03031 Csa-Chr6:26076654 Csa03g04064 Csa-Chr3:35570090 1.81E-36 dispersed
Csa06g01113 Csa-Chr6:9228120 Csa06g03031 Csa-Chr6:26076654 7.03E-07 transposed
Csa04g00018 Csa-Chr4:139643 Csa06g03031 Csa-Chr6:26076654 2.30E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32135 PF00538 Linker_histone 2.60E-11 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03031 K09422 - csv:101202913 518.079