Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03048 | ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCTGCTGCTACTTCTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGCCTTTTATTCACCATTGTCTGCCATGCCCCTCAAGTCAGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAACATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAGAGTAATGACAGGGAAGCTATGGCTCTCAGTCTAGACAGCATATTTTGCCATCAAAACCCAACGCATGAGCCCAACAACCAATCTTTTGCCCATTTCTCATCCTTGAGAAGCCGTGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAACAACACCCAGGAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGACTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTTCTATTAATGCCATGGCTTATGGAGATTTGCAGTCATTGAGCTTGTCTATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAGCCACGCAGCATGTCTCACCTGCTATGACTGACTGTTCTGCTATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAAAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGACAAGTGTACCTCGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATACGTTGCTCACCTGAGAAGAAGAAGCAGTGGGTTCTCGAGAGGAGCCTCGATATACCGAGGTGTAACAAGACACCATCAACATGGAAGATGGCAGGCTCGTATTGGCCGAGTTGCTGGTAACAAAGATCTCTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCATATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTTGATATCACGAGGTATGATGTTGAGCGGATCATTGCAAGCAATACCCTCCTAAGTGGGGATCTAGCTAAGAGAAAGCAACAGCCAGAGTTTGACAATGAATCACTCAGACAAAGCCCTCCTACTCACAACAGCAATTCAGAAGCTATGACTCTGCCCTCACAGAGTAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCATTCCTCACAACAGCTCATTCCAAAGCCACGAATGCTGTCTGCGATAAATGACGATGGATCACAACTCGGTGTTGAAGATTCTGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTTACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTACCTCGGCTAATAATATGAACACCTCCTGGATTGCATCTGCCCAGCAGATAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA | 1890 | 45.24 | MNNVNGNNCNWLGFSVSPNVNMELSSSAATSVSPSIPANLFHSPSQFNYGICYGVDGEHGAFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQSFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHPGVAQSDISGMKNWTVPRNYAATNNGSFEQKMVSCMSENGGESGSINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMTDCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSNSEAMTLPSQSSSQSESDWKMALYHSSQQLIPKPRMLSAINDDGSQLGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFATSANNMNTSWIASAQQIRAANCMSQLPVFAAWTDT* | 630 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26200005 | 26204175 | + | CsaV3_6G044340.1 | Csa06g03048 | 534675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03048 | 629 | ProSiteProfiles | AP2/ERF domain profile. | 394 | 452 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | Coils | Coil | 359 | 379 | - | - | |
Csa06g03048 | 629 | CDD | AP2 | 393 | 454 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | MobiDBLite | consensus disorder prediction | 473 | 513 | - | - | |
Csa06g03048 | 629 | Gene3D | AP2/ERF domain | 394 | 454 | IPR036955 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | Gene3D | AP2/ERF domain | 291 | 360 | IPR036955 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | ProSiteProfiles | AP2/ERF domain profile. | 292 | 358 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | CDD | AP2 | 291 | 358 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | SMART | rav1_2 | 292 | 364 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | SMART | rav1_2 | 394 | 458 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | SUPERFAMILY | DNA-binding domain | 393 | 453 | IPR016177 | GO:0003677 | |
Csa06g03048 | 629 | MobiDBLite | consensus disorder prediction | 483 | 513 | - | - | |
Csa06g03048 | 629 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 627 | - | - | |
Csa06g03048 | 629 | SUPERFAMILY | DNA-binding domain | 291 | 360 | IPR016177 | GO:0003677 | |
Csa06g03048 | 629 | Pfam | AP2 domain | 394 | 444 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | Pfam | AP2 domain | 292 | 350 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 8 | 627 | - | - | |
Csa06g03048 | 629 | PRINTS | Ethylene responsive element binding protein signature | 293 | 304 | IPR001471 | GO:0003700|GO:0006355 | |
Csa06g03048 | 629 | PRINTS | Ethylene responsive element binding protein signature | 434 | 454 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02829 | Csa-Chr3:27057687 | Csa06g03048 | Csa-Chr6:26200005 | 2.44E-135 | dispersed | |
Csa04g01404 | Csa-Chr4:14070320 | Csa06g03048 | Csa-Chr6:26200005 | 6.59E-119 | dispersed | |
Csa01g01916 | Csa-Chr1:16023418 | Csa06g03048 | Csa-Chr6:26200005 | 4.28E-75 | transposed | |
Csa01g02157 | Csa-Chr1:18716067 | Csa06g03048 | Csa-Chr6:26200005 | 1.20E-122 | transposed | |
Csa02g00816 | Csa-Chr2:7285623 | Csa06g03048 | Csa-Chr6:26200005 | 7.94E-120 | transposed | |
Csa03g00690 | Csa-Chr3:6134843 | Csa06g03048 | Csa-Chr6:26200005 | 1.36E-112 | transposed | |
Csa03g03763 | Csa-Chr3:33363920 | Csa06g03048 | Csa-Chr6:26200005 | 2.32E-10 | transposed | |
Csa03g03861 | Csa-Chr3:33997329 | Csa06g03048 | Csa-Chr6:26200005 | 2.82E-08 | transposed | |
Csa05g02684 | Csa-Chr5:27738310 | Csa06g03048 | Csa-Chr6:26200005 | 4.25E-85 | transposed | |
Csa07g02084 | Csa-Chr7:20100472 | Csa06g03048 | Csa-Chr6:26200005 | 1.06E-88 | transposed | |
Csa02g01870 | Csa-Chr2:17788116 | Csa06g03048 | Csa-Chr6:26200005 | 0 | wgd | |
Csa04g02504 | Csa-Chr4:24869562 | Csa06g03048 | Csa-Chr6:26200005 | 8.90E-172 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32139 | PF00847 | AP2 | 1.20E-13 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03048 | K09285 | - | csv:101203323 | 1219.53 |