Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03048 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGCTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCTGCTGCTACTTCTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTTTAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGCCTTTTATTCACCATTGTCTGCCATGCCCCTCAAGTCAGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAACATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAGAGTAATGACAGGGAAGCTATGGCTCTCAGTCTAGACAGCATATTTTGCCATCAAAACCCAACGCATGAGCCCAACAACCAATCTTTTGCCCATTTCTCATCCTTGAGAAGCCGTGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAACAACACCCAGGAGTAGCCCAGAGTGATATTTCTGGTATGAAGAATTGGACTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTTCTATTAATGCCATGGCTTATGGAGATTTGCAGTCATTGAGCTTGTCTATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAGCCACGCAGCATGTCTCACCTGCTATGACTGACTGTTCTGCTATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAAAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGACAAGTGTACCTCGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATACGTTGCTCACCTGAGAAGAAGAAGCAGTGGGTTCTCGAGAGGAGCCTCGATATACCGAGGTGTAACAAGACACCATCAACATGGAAGATGGCAGGCTCGTATTGGCCGAGTTGCTGGTAACAAAGATCTCTATCTTGGGACATTCAGTACTCAAGAGGAAGCAGCTGAGGCATATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTTGATATCACGAGGTATGATGTTGAGCGGATCATTGCAAGCAATACCCTCCTAAGTGGGGATCTAGCTAAGAGAAAGCAACAGCCAGAGTTTGACAATGAATCACTCAGACAAAGCCCTCCTACTCACAACAGCAATTCAGAAGCTATGACTCTGCCCTCACAGAGTAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCATTCCTCACAACAGCTCATTCCAAAGCCACGAATGCTGTCTGCGATAAATGACGATGGATCACAACTCGGTGTTGAAGATTCTGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTTACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTGTTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTACCTCGGCTAATAATATGAACACCTCCTGGATTGCATCTGCCCAGCAGATAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1890 45.24 MNNVNGNNCNWLGFSVSPNVNMELSSSAATSVSPSIPANLFHSPSQFNYGICYGVDGEHGAFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQSFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHPGVAQSDISGMKNWTVPRNYAATNNGSFEQKMVSCMSENGGESGSINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPAMTDCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSNSEAMTLPSQSSSQSESDWKMALYHSSQQLIPKPRMLSAINDDGSQLGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFATSANNMNTSWIASAQQIRAANCMSQLPVFAAWTDT* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26200005 26204175 + CsaV3_6G044340.1 Csa06g03048 534675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03048 629 ProSiteProfiles AP2/ERF domain profile. 394 452 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 Coils Coil 359 379 - -
Csa06g03048 629 CDD AP2 393 454 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 MobiDBLite consensus disorder prediction 473 513 - -
Csa06g03048 629 Gene3D AP2/ERF domain 394 454 IPR036955 GO:0003700|GO:0006355
Csa06g03048 629 Gene3D AP2/ERF domain 291 360 IPR036955 GO:0003700|GO:0006355
Csa06g03048 629 ProSiteProfiles AP2/ERF domain profile. 292 358 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 CDD AP2 291 358 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 SMART rav1_2 292 364 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 SMART rav1_2 394 458 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 SUPERFAMILY DNA-binding domain 393 453 IPR016177 GO:0003677
Csa06g03048 629 MobiDBLite consensus disorder prediction 483 513 - -
Csa06g03048 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 627 - -
Csa06g03048 629 SUPERFAMILY DNA-binding domain 291 360 IPR016177 GO:0003677
Csa06g03048 629 Pfam AP2 domain 394 444 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 Pfam AP2 domain 292 350 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 627 - -
Csa06g03048 629 PRINTS Ethylene responsive element binding protein signature 293 304 IPR001471 GO:0003700|GO:0006355
Csa06g03048 629 PRINTS Ethylene responsive element binding protein signature 434 454 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02829 Csa-Chr3:27057687 Csa06g03048 Csa-Chr6:26200005 2.44E-135 dispersed
Csa04g01404 Csa-Chr4:14070320 Csa06g03048 Csa-Chr6:26200005 6.59E-119 dispersed
Csa01g01916 Csa-Chr1:16023418 Csa06g03048 Csa-Chr6:26200005 4.28E-75 transposed
Csa01g02157 Csa-Chr1:18716067 Csa06g03048 Csa-Chr6:26200005 1.20E-122 transposed
Csa02g00816 Csa-Chr2:7285623 Csa06g03048 Csa-Chr6:26200005 7.94E-120 transposed
Csa03g00690 Csa-Chr3:6134843 Csa06g03048 Csa-Chr6:26200005 1.36E-112 transposed
Csa03g03763 Csa-Chr3:33363920 Csa06g03048 Csa-Chr6:26200005 2.32E-10 transposed
Csa03g03861 Csa-Chr3:33997329 Csa06g03048 Csa-Chr6:26200005 2.82E-08 transposed
Csa05g02684 Csa-Chr5:27738310 Csa06g03048 Csa-Chr6:26200005 4.25E-85 transposed
Csa07g02084 Csa-Chr7:20100472 Csa06g03048 Csa-Chr6:26200005 1.06E-88 transposed
Csa02g01870 Csa-Chr2:17788116 Csa06g03048 Csa-Chr6:26200005 0 wgd
Csa04g02504 Csa-Chr4:24869562 Csa06g03048 Csa-Chr6:26200005 8.90E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32139 PF00847 AP2 1.20E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03048 K09285 - csv:101203323 1219.53