Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03058 ATGGGTTTTGATGATCTTTCTAATACAAGCCTTCTTCTTGGTTTGGGATTAACACTTCCCTCTAATCCTCCTCATCTAATTTCTCAAAAACCCAAGAAGCCACTCGATTTCCTCTGTTTTCCCCCTCCTGAATCCGAGCCCTCCTTAACTTTGGGCCTTTCCACCGTCGATACCTACCCTTCTGAAACCCCTGATTTGTCTCGCCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGAAGCAGGGTCAAACGTGAAAGAGATGTTTCCGGTGAAGAGATTGAAGAGGAGAAAGCTTCTTCTCGTGTCAGCGATGAAGATGAAGATGGTTCTAATGCTAGAAAAAAACTTAGACTAACTAAAGAACAATCTGCCCTATTGGAGGAGAGCTTTAAACTTCACAGTACTCTTAACCCTAAGCAAAAGCAAGCCTTAGCTAGCGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAACTTAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTACAAAAAGAGCTACAAGAACTGAAAGCCTTGAAACTAGCGCAGCCACTGTTCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCGTCTTGTGAGCGGATCGGCGGTGGCGCCGCCACGGTTAACGGCGACGGAAACGCCAAGGGCCCATTTTCGATAGCTACCAAGCCCCGGTTTTACAAAGCCTTCACCAAGCCTTCGGCTGCTTGCTAA 795 47.92 MGFDDLSNTSLLLGLGLTLPSNPPHLISQKPKKPLDFLCFPPPESEPSLTLGLSTVDTYPSETPDLSRQPSPHSAISSFSGSRVKRERDVSGEEIEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALASELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNAKGPFSIATKPRFYKAFTKPSAAC* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26295272 26296953 + CsaV3_6G044440.1 Csa06g03058 534685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03058 264 MobiDBLite consensus disorder prediction 48 81 - -
Csa06g03058 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 264 - -
Csa06g03058 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Csa06g03058 264 SMART HOX_1 113 175 IPR001356 GO:0003677
Csa06g03058 264 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Csa06g03058 264 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Csa06g03058 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Csa06g03058 264 Gene3D - 108 176 - -
Csa06g03058 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Csa06g03058 264 PANTHER - 1 264 - -
Csa06g03058 264 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Csa06g03058 264 MobiDBLite consensus disorder prediction 82 118 - -
Csa06g03058 264 Coils Coil 177 207 - -
Csa06g03058 264 MobiDBLite consensus disorder prediction 18 118 - -
Csa06g03058 264 CDD homeodomain 115 172 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03564 Csa-Chr3:31859666 Csa06g03058 Csa-Chr6:26295272 1.21E-69 dispersed
Csa06g03058 Csa-Chr6:26295272 Csa07g02054 Csa-Chr7:19866731 2.76E-75 dispersed
Csa01g02201 Csa-Chr1:19087128 Csa06g03058 Csa-Chr6:26295272 1.04E-58 transposed
Csa03g02434 Csa-Chr3:22508106 Csa06g03058 Csa-Chr6:26295272 6.11E-93 transposed
Csa05g01220 Csa-Chr5:12811044 Csa06g03058 Csa-Chr6:26295272 4.60E-47 transposed
Csa05g02044 Csa-Chr5:23758676 Csa06g03058 Csa-Chr6:26295272 2.71E-50 transposed
Csa04g02512 Csa-Chr4:24953048 Csa06g03058 Csa-Chr6:26295272 9.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32141 PF00046 Homeodomain 3.40E-16 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03058 K09338 - csv:101218782 495.738