Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03067 ATGATCAGTGTCACCAATATTCAACCTTCAAATATTATATGCAAACAAATATGGCTTCTTCTTCTTGTTTTTCTGATTCTCCATTTTCACTTTTCCCCTTCTTTCTCTGCTTTCCTTCCCGAATCCCAAGCTCTTCTCTCTCTCAAATCCTCCATCTCTGACGACCCTCATTCTTCTCTCTCCTCCTGGAACCCTGCCGCCGTTCACGCCCACTGTTCCTGGCTCGGTGTCACATGCGACTCCCGCCGCCACGTCGTTGCCTTAGACCTCTCTTCCCTTGACCTCACCGCCACCATTTCCCCTCACATTTCCTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAAATTTTCGGCGGTATCCCACCAGAGATTGCCTCCCTTTCGTCTCTCCAGCTTCTTAATCTCTCTAGTAACGTCCTTAATGGGTCCATTCCTAGCGAGTTTTCGCGGCTCAAGAACTTGCAGGTTCTTGATGTTTATAATAATAATCTGACCGGTGATTTCCCCAGAGTGGTCACTGAAATGCCCAACCTCCGCTATTTGCATCTTGGGGGTAATTTCTTTACCGGTCGGATTCCTCCGGAGGTTGGGCGGTTGCAGTTCTTGGAGTTTCTGGCGATTCACGGCAATGACCTCGAAGGTCCAATACCGCCGGCTATCGGAAACTTGACGAAGCTTCGGGAGCTTTTCATTGGTTACTACAACACATTTGTTGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGAGTGGAAAGTTTCCACGGGAGCTCGGAAAGTTACAGAAGCTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGTTCGTTGATGGAGCTTGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGTGTTTAAGAACTTGAGGCTATTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATACCGGAGTTCATGGCCGACCTCCCTAAGCTGGAAATATTGCAATTATGGAACAACAATTTCACTGGTTCCATCCCTCGAAATTTGGGGAAGAATGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACCTGACAGGTACGATTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGACAATTCCTTGTCTGGTTTGATTCCAGAATCGTTGGGGAACTGTCTTTCACTTAAACGTATACTTCTGTGGGGCAACGCTCTTAATGGATCAATTCCAAGGAGGCTTTTGGGTTTGCCAAATATCACTCAAATTGATTTGCATGACAATTTTCTCTCCGGCGAACTTCCGATTATCAATTCAGTCTCAGTTAATCTTCTTCAGATAAGTCTATCGAATAATATGCTCTCTGGATCCTTGCCACCAACCATAGGCAGCCTTGTGGCTGTCCAGAAGCTTCTTCTTGATCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGAATAAATTTCAGCCAGAATAAGTTCTCTGGTTCAATTGTGCCGGAGATAAGTGAGTGTAAACACTTGATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATTCCTAACCATATTACCAACATGAAATTATTGAATTATATGAATCTCTCAAGAAACCACTTAGTTGGGCCTATTCCTGCTTCCATAGTTAATATGCAGAGCCTAACCTCTGTTGATTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGGCAATTTGGGTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGACCATATTTGGGGCCTTGCAAAGATGGGCTTCTTGCAAGCAATCAACAAGAACATACGAAAGGATCTCTCTCAACTCCTCTCAGGCTCCTGCTAGCTTTTGGGTTTTTCTTTTGCTTAGTTGCAGTGACAGTTGGATTGATCTTCAAAGTTGGGTGGTTCAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTTGGCTTCTCGGTTGATGAGATATTGGAATGCCTTAAAAAGGAAAATCTTATTGCAAAGGGAGGTTATGGCACAGTATATACAGGAGTGATGCCAAGTGGTGATCAGATCACTGTGAAAAGGCTTCCAAAGACGAGCAATGGGTGTACTCGTGACAACAAGTTCGATGCTGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACATCGTTAGATTATTGGGTCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTTCATGGCAAGAAAGGAGGTCACTTGCTCTGGGAGACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTTTGCTATCTTCACCACCATTGCTCACCGCCCATTGTTCATCGAAATGTGAAGTCGAACAACATTATGCTTGACACCAACTTTGATGCTCAGATTGCTAATTCCGGGCTTGCGAAGTTCTTACAAGATTCAGGGGCATCGGATATTTCAGCTACTGAGCCAGAACACACCTACACACAGAATGCCGACGAGAAATGGGATGTATATAGTTTCGGTGTCGTTCTCTTGGAACTTGTTAGCGGTAGGAATCCAGATATAGAACTAAGCAACAGTGTCGACTTAGTTCAATGGGTTAGAAACATGACAGACACAAAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCAGTCCCCCTCGACGAAGTAATCCACGTGCTCAATGTCGCCATGCTGTGCACTGAAGAAGAGGCTCCAAAGCGTCCCACGATGCGGGAAGTTGTCCGGATCTTAACCGAGCATCAGCAACCATCATTCTCGAAGGAGAATAGAGATACGTGA 2955 44.64 MISVTNIQPSNIICKQIWLLLLVFLILHFHFSPSFSAFLPESQALLSLKSSISDDPHSSLSSWNPAAVHAHCSWLGVTCDSRRHVVALDLSSLDLTATISPHISSLRFLTNVSFGLNKIFGGIPPEIASLSSLQLLNLSSNVLNGSIPSEFSRLKNLQVLDVYNNNLTGDFPRVVTEMPNLRYLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGNLTKLRELFIGYYNTFVGGIPATIGNLSELVRLDAASCGLSGKFPRELGKLQKLTELYLQQNALSGSLMELGGLKSIEELDISCNMLVGEIPISFAVFKNLRLLQLFDNKLSGEIPEFMADLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTIPPEICHGNKLEVLIAMDNSLSGLIPESLGNCLSLKRILLWGNALNGSIPRRLLGLPNITQIDLHDNFLSGELPIINSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGSIVPEISECKHLIFLDLSGNELSGEIPNHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGPYLGPCKDGLLASNQQEHTKGSLSTPLRLLLAFGFFFCLVAVTVGLIFKVGWFKRARESRGWRLTAFQRLGFSVDEILECLKKENLIAKGGYGTVYTGVMPSGDQITVKRLPKTSNGCTRDNKFDAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWETRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFDAQIANSGLAKFLQDSGASDISATEPEHTYTQNADEKWDVYSFGVVLLELVSGRNPDIELSNSVDLVQWVRNMTDTKKEEIHKIVDQRLSSVPLDEVIHVLNVAMLCTEEEAPKRPTMREVVRILTEHQQPSFSKENRDT* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26338997 26342758 - CsaV3_6G044530.1 Csa06g03067 534694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03067 984 Pfam Protein tyrosine and serine/threonine kinase 707 969 IPR001245 GO:0004672|GO:0006468
Csa06g03067 984 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515
Csa06g03067 984 Gene3D Ribonuclease Inhibitor 370 635 IPR032675 -
Csa06g03067 984 Gene3D Ribonuclease Inhibitor 40 195 IPR032675 -
Csa06g03067 984 Gene3D Phosphorylase Kinase; domain 1 678 783 - -
Csa06g03067 984 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 18 976 - -
Csa06g03067 984 SUPERFAMILY RNI-like 88 408 - -
Csa06g03067 984 SUPERFAMILY Protein kinase-like (PK-like) 701 969 IPR011009 -
Csa06g03067 984 Pfam Leucine Rich Repeat 541 561 IPR001611 GO:0005515
Csa06g03067 984 Gene3D Ribonuclease Inhibitor 297 369 IPR032675 -
Csa06g03067 984 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Csa06g03067 984 Gene3D Ribonuclease Inhibitor 196 295 IPR032675 -
Csa06g03067 984 SMART LRR_typ_2 346 370 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 490 514 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 178 202 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 130 154 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 275 298 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 371 394 IPR003591 -
Csa06g03067 984 SMART LRR_typ_2 586 609 IPR003591 -
Csa06g03067 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 18 976 - -
Csa06g03067 984 SUPERFAMILY L domain-like 370 631 - -
Csa06g03067 984 Gene3D Transferase(Phosphotransferase) domain 1 784 983 - -
Csa06g03067 984 ProSiteProfiles Protein kinase domain profile. 706 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00638 Csa-Chr3:5527147 Csa06g03067 Csa-Chr6:26338997 0 dispersed
Csa03g04290 Csa-Chr3:37558642 Csa06g03067 Csa-Chr6:26338997 0 dispersed
Csa06g03067 Csa-Chr6:26338997 Csa03g02633 Csa-Chr3:24824322 0 dispersed
Csa06g03067 Csa-Chr6:26338997 Csa06g03068 Csa-Chr6:26350693 0 tandem
Csa03g02986 Csa-Chr3:28466318 Csa06g03067 Csa-Chr6:26338997 3.11E-22 transposed
Csa03g04544 Csa-Chr3:39605940 Csa06g03067 Csa-Chr6:26338997 3.34E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78420 PF07714 PK_Tyr_Ser-Thr 4.00E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03067 - - csv:101204543 1937.15