Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03068 ATGCGTCTTCTTCTTCTTCTTCTCCTTTGTCTTCTTCACCTCCAACTCCACATTCATCATTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCTCTTCTCTCCCTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTTGCTTCCTGGAACGCTTCTACCAGTCATTGTACTTGGTTTGGGGTCACTTGCGATCTTCGTCGCCATGTCACTGCCCTAGATCTCACTGCTCTCGGTCTTTCTGGTTCTCTCTCCCCTGATGTTGCTTTTTTAAGATTTCTCACTAATCTTTCTCTCGCTGCCAATGAGTTTTCTGGTCCCATCCCGCCGGAGCTTTCTTCAATCTCTTCACTTCGCCTCCTTAACTTGTCTAATAATGTTTTCGATGGGTCCTTCCCTTCACGGTTTTCGCAGCTGCAGAATCTTCACGTTCTTGATTTGTATAACAACAATATGACTGGAGATTTCCCCATTGTGGTCACTCAAATGTCGGGCCTCCGTCATTTGCATTTGGGAGGAAATTTCTTTGCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCGGGTAACGAGCTTAGCGGTTCGATACCTCCGGAGCTCGGAAACCTTACGAACCTTCGTGAGCTTTACATTGGCTACTTCAACGCTTACGACGGCGGTCTTCCAGCTGAGATTGGGAATTTGTCACAGTTGGTACGGTTGGACGCTGCGAACTGTGGACTGTCTGGCCGGATTCCTCCGGAGCTTGGAAAGCTGCAGAATCTCGATACTTTGTTTCTACAAGTTAATGCTCTATCTGGGCCATTGACACCGGAGATTGGACAGTTGAACAGTTTGAAATCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGTCTCGTTCGCCCAGTTGAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGTTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACTTGGGGAAGAACGGAATGCTTCAGATATTGGACCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGTTTTGGTAATCGGCTTCAAATTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCCCTTAATCGTATTCGTATGGGAGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTAAGTCTTCCCAAGCTTTCTCAGGTGGAGTTACAAGATAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCAATCTCATTGAATCTCGGCCAGATTAGTCTTTCCAACAACCGACTCACTGGGTCGATTCCGCCAACAATTGGCAACTTCTCCGGCGTCCAGAAATTACTCCTCGACGGAAACAAGTTTTCCGGTCAAATCCCACCTGAAATCGGGCGGTTACAGCAACTTTCGAAGATAGATTTCAGCAGCAACATGCTATCGGGTCCAATCGCGCCGGAGATTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACCAGCTCTCAGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACTTGAATCTCTCAAAAAACCATTTAGTCGGTGGAATCCCTGCTACCATAGCCAGCATGCAGAGTTTAACCTCCGTGGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTCTCGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGTAATTACCAACAACATGTGAAGGGCCCTCTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCTTTGAAGAGAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGCTTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAAGATAATATTATTGGAAAGGGTGGGGCTGGAATTGTCTATAAAGGGGCCATGTCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGGGGATCGTCCCATGATCATGGATTCAATGCTGAGATACAAACTCTTGGGAGAATTCGACATCGACATATTGTAAGACTATTGGGGTTCTGTTCAAACCATGAAACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGCTTAGGGGAAGTTCTTCATGGCAAAAAAGGAGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCTGCTAAAGGCCTTTGCTATCTCCACCATGATTGTTCGCCACTCATTGTTCACCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCGGATTTTGGCCTCGCCAAGTTCTTACAGGATTCTGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACACTAAAAGTTGATGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAACTTGTCAGTGGTAGAAAACCCGTTGGAGAATTTGGGGATGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTTGACCCAAGGCTCTCCTCCGTGCCACTCCACGAAGTGATGCACGTCTTCTACGTTGCAATGCTATGTGTGGAGGAACAGGCAGTGGAGCGCCCAACAATGAGGGAAGTGATCCAAATCCTATCGGAGATTCCACAGCCACCAAGTTCAAAACAAGGAGGAGATTCAACACTCCCCAACTCGTCACCACCCCCACCACCAACAGCTGCAGATTTAGACCTTCCAACAACAGGAACCAAGAACAAAAAAGAACATCAGCAACAGCAACCGCCACCAGATCTTCTTAGCATTTGA 3060 46.34 MRLLLLLLLCLLHLQLHIHHSLSARVSEYRALLSLKTSITGDPKSSLASWNASTSHCTWFGVTCDLRRHVTALDLTALGLSGSLSPDVAFLRFLTNLSLAANEFSGPIPPELSSISSLRLLNLSNNVFDGSFPSRFSQLQNLHVLDLYNNNMTGDFPIVVTQMSGLRHLHLGGNFFAGRIPPEVGRMQSLEYLAVSGNELSGSIPPELGNLTNLRELYIGYFNAYDGGLPAEIGNLSQLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGQLNSLKSLDLSNNMLVGEIPVSFAQLKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCFGNRLQILIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSSNMLSGPIAPEISQCKLLTFVDLSRNQLSGEIPNEITSMRILNYLNLSKNHLVGGIPATIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMSSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPSSKQGGDSTLPNSSPPPPPTAADLDLPTTGTKNKKEHQQQQPPPDLLSI* 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26350693 26355121 - CsaV3_6G044540.1 Csa06g03068 534695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03068 1019 Gene3D Transferase(Phosphotransferase) domain 1 770 977 - -
Csa06g03068 1019 Pfam Leucine Rich Repeat 286 306 IPR001611 GO:0005515
Csa06g03068 1019 MobiDBLite consensus disorder prediction 966 1019 - -
Csa06g03068 1019 SUPERFAMILY RNI-like 73 394 - -
Csa06g03068 1019 MobiDBLite consensus disorder prediction 1003 1019 - -
Csa06g03068 1019 SMART LRR_typ_2 357 380 IPR003591 -
Csa06g03068 1019 SMART LRR_typ_2 572 595 IPR003591 -
Csa06g03068 1019 SMART LRR_typ_2 187 211 IPR003591 -
Csa06g03068 1019 SMART LRR_typ_2 332 356 IPR003591 -
Csa06g03068 1019 SMART LRR_typ_2 284 307 IPR003591 -
Csa06g03068 1019 SUPERFAMILY Protein kinase-like (PK-like) 684 963 IPR011009 -
Csa06g03068 1019 Gene3D Ribonuclease Inhibitor 356 621 IPR032675 -
Csa06g03068 1019 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 982 - -
Csa06g03068 1019 SUPERFAMILY L domain-like 301 617 - -
Csa06g03068 1019 SMART serkin_6 692 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03068 1019 Gene3D Ribonuclease Inhibitor 89 355 IPR032675 -
Csa06g03068 1019 Gene3D Ribonuclease Inhibitor 21 88 IPR032675 -
Csa06g03068 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Csa06g03068 1019 MobiDBLite consensus disorder prediction 966 980 - -
Csa06g03068 1019 Gene3D Phosphorylase Kinase; domain 1 657 769 - -
Csa06g03068 1019 Pfam Protein tyrosine and serine/threonine kinase 694 963 IPR001245 GO:0004672|GO:0006468
Csa06g03068 1019 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515
Csa06g03068 1019 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 982 - -
Csa06g03068 1019 ProSiteProfiles Protein kinase domain profile. 692 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03068 1019 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03068 Csa-Chr6:26350693 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa06g03067 Csa-Chr6:26338997 Csa06g03068 Csa-Chr6:26350693 0 tandem
Csa02g00250 Csa-Chr2:1699040 Csa06g03068 Csa-Chr6:26350693 5.00E-158 transposed
Csa03g00638 Csa-Chr3:5527147 Csa06g03068 Csa-Chr6:26350693 0 transposed
Csa03g02633 Csa-Chr3:24824322 Csa06g03068 Csa-Chr6:26350693 0 transposed
Csa03g04290 Csa-Chr3:37558642 Csa06g03068 Csa-Chr6:26350693 0 transposed
Csa04g00403 Csa-Chr4:2466393 Csa06g03068 Csa-Chr6:26350693 0 transposed
Csa04g02122 Csa-Chr4:21951952 Csa06g03068 Csa-Chr6:26350693 6.10E-137 transposed
Csa04g02582 Csa-Chr4:25361069 Csa06g03068 Csa-Chr6:26350693 4.65E-157 transposed
Csa05g01100 Csa-Chr5:11224160 Csa06g03068 Csa-Chr6:26350693 4.06E-162 transposed
Csa02g02237 Csa-Chr2:20106593 Csa06g03068 Csa-Chr6:26350693 1.32E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78421 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03068 - - csv:101219011 1930.99