Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa06g03087 | ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCAACACCTTGGACTTCTTCATACTCAAACGGGTTCAATGATTTTTTTCAAAATGGCTGGAATTTCACTTCTTTTGATGAAAATCCCCAAATGGCTTCTTCCACTTTCTCCAATTTTCCCACTATCCAAACACCTAATGATTTTTCTTTCGCCGATCAACAACTCTACAGCAATTTTCTCGAAGGGTTTGCGATGCCGGAGCTCGATTCCTCGTCCTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTAATAAGAACAATGGTTACCCTCCCGTGGCGATGGAGGAGGAAGAACTTGGTTTTATCGAGACTGAAACAGCTCCAAGTGTTTGTAAAGTGGAAATGGAGCAAATGGGTGTTCGTGAAATTAATGGTTCTATAATGGGTGTCGCAGAATTGGGAAAAAGAAGCAGCAACAAAGCTAAGAAGATTGAAGGACAGCCTTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAACTGGTTTAGATTCAAATCACGTGGGTTTCTTCAATGGGATCTCTAAGGAAGGGAAGTCCAATGAGGTTCAAGTGAGAAATTCTCCAAAGTTCGATGTTGAAAGGAAGGAGAAGGAGACTCGAATCGACATTTGCTGTGCAACAAGGCCAGGATTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGTCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTGCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAAGCACTGTTCAGAAATGCAGGATATGGAGGAAAGTGCTTGTAG | 1026 | 41.23 | MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFTSFDENPQMASSTFSNFPTIQTPNDFSFADQQLYSNFLEGFAMPELDSSSYTKNNETPPFVSQEEMSNKNNGYPPVAMEEEELGFIETETAPSVCKVEMEQMGVREINGSIMGVAELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEETGLDSNHVGFFNGISKEGKSNEVQVRNSPKFDVERKEKETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCAEGSAQKAVASSDDIKEALFRNAGYGGKCL* | 342 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 26485325 | 26487050 | - | CsaV3_6G044730.1 | Csa06g03087 | 534714 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa06g03087 | 341 | Gene3D | - | 167 | 234 | IPR036638 | GO:0046983 | |
| Csa06g03087 | 341 | Pfam | Helix-loop-helix DNA-binding domain | 172 | 215 | IPR011598 | GO:0046983 | |
| Csa06g03087 | 341 | SMART | finulus | 172 | 221 | IPR011598 | GO:0046983 | |
| Csa06g03087 | 341 | CDD | ACT_UUR-ACR-like | 267 | 308 | - | - | |
| Csa06g03087 | 341 | Coils | Coil | 205 | 225 | - | - | |
| Csa06g03087 | 341 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 228 | IPR036638 | GO:0046983 | |
| Csa06g03087 | 341 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 3 | 341 | - | - | |
| Csa06g03087 | 341 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 3 | 341 | - | - | |
| Csa06g03087 | 341 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 215 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa06g03087 | Csa-Chr6:26485325 | Csa02g00670 | Csa-Chr2:5179234 | 4.73E-15 | dispersed | |
| Csa03g02566 | Csa-Chr3:24067204 | Csa06g03087 | Csa-Chr6:26485325 | 4.15E-37 | transposed | |
| Csa02g02231 | Csa-Chr2:20027274 | Csa06g03087 | Csa-Chr6:26485325 | 1.42E-82 | wgd | |
| Csa03g04520 | Csa-Chr3:39394424 | Csa06g03087 | Csa-Chr6:26485325 | 4.03E-84 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 32146 | PF00010 | HLH | 1.90E-09 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa06g03087 | - | - | csv:101205974 | 674.47 |