Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03095 ATGGGTAGAGGGAAGATTGTGATAAGAAGGATCGATAATTCAGCAAGTAGACAAGTAACTTTTTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGCTCCAGCATGCATTCAATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAGGAGGTAACAACATTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGAAAATTAATGGGGGAGCAACTCTATGGTTTATCAATGAAAGATCTAAACAATCTTGAGAATCAATTGGAGTTCAGCTTACAAAGCATTCGAATTAAAAAGGAACAATTATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATCATCGCTGCGGCCCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCTCAGCCCGCGGGAGCAACAAGCTTAA 687 38.14 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVKEVTTLRQQLHNLQENNRKLMGEQLYGLSMKDLNNLENQLEFSLQSIRIKKEQLLNDEIKELNRKGILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQLSPREQQA* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26520126 26524096 - CsaV3_6G044810.1 Csa06g03095 534722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03095 228 Coils Coil 89 109 - -
Csa06g03095 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 Coils Coil 119 139 - -
Csa06g03095 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Csa06g03095 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g03095 228 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Csa06g03095 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g03095 228 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 227 - -
Csa06g03095 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Csa06g03095 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Csa06g03095 228 Pfam K-box region 87 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01173 Csa-Chr4:10151096 Csa06g03095 Csa-Chr6:26520126 1.54E-75 dispersed
Csa06g03095 Csa-Chr6:26520126 Csa05g03218 Csa-Chr5:31724175 7.80E-44 dispersed
Csa01g02690 Csa-Chr1:23890847 Csa06g03095 Csa-Chr6:26520126 6.03E-12 transposed
Csa03g04509 Csa-Chr3:39311564 Csa06g03095 Csa-Chr6:26520126 5.45E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32147 PF01486 K-box 6.20E-22 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03095 K09264 - csv:101206453 425.246