Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03096 ATGGCTGCTCTTCTTTTCTTCTTCTTCGGTTTAGCTCTTGCCATGGCCGTACCACCACAACAAGATTCTTCCCAACAAATTTTGGAGGAGAACAACAATAAAGCAATGTTGTCACGCGACGTAACGTTAGAACTGCAGAATCATGGTCAGGTAATAATTGACAATGGCATAGTTCGAGTCACTTTATCTCGTCCTGATGGCGATGTTATTGCTTTAAAATACAATGGTATTGACAACCTCCTTGAAATTCGCAACGTCCAATCTAACAGAGGATATTGGGACGTTGTTTGGAACCGCCCAAATAAAGCAAGTGCCACTGACAGGTATATTCTGCGACGTGGGGATTCTGGGTTCTACTCATATGGTATATTTGAACGCCTCAATGGATGGCCTCAAATTGAGGTTGATCAAATTAGAATTGCCTACAAACTCCTAGGAGACAAATTTCATTACATGGCGATATCAGACAATAGACAGAGAATGATGCCAACTGCAGAGGACCGTCTTACTGGGAAGCCTTTGGATTATCCGGAGGCGGTTCTATTAACCCGACCGAGGGATCCAAGCTTTAGAGGAGAGGTGGACGATAAGTACCAATACTCATTAGAAAATATGGAGAACAAGGTTCATGGATGGGAGTCAAGTGATCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTCCGTACGGCTGGTCCGGTCAAGCAAGATCTCACTTCCCACGTCGGCCCCGTAACTCTTTCTATGTTTGTGAGTACACATTATGCGGGTAAAGACGTTTCCATGAGATTTCAAGAGGGAGAAGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATATTAACTCCGACCCAACCGGAACTGGTAAACCCGGTTCACTCTGGGACGATGCTAAAAACCAGATGAGGATTGAAACAAGTAAATGGCCATACAACTTTGTCGAATCCACAGAATTTCCATCGTCAGAACAAAGAGGAAGCTTGAGTGGTCAATTATTAGTCCGAGATGGATTCGCTAAGTACCCACAGATGTGGGGAGATTCCGCTTATGTGGGCCTTGCTGCTCCTGGGGAACTAGGGTCTTGGCAAAGAGAAAGCAAGGGATATCAATTTTGGACACGAGCGGACGATCATGGATACTTCTCAATTGATAACATTAGATCGGGAACTTACAATTTATATGCTTGGGTACCTGGTGTCCTTGGTGATTACAAGTATGATAACCAAATCACCATCACACCAAGAAGTTCCACTAATCTAAATTTGTTGGTCTTTCACCCTCCAAGACAGGGCCCAACTTTGTGGGAGATTGGCATCCCAGATCGGAAGGCAGCTGAGTTCTATATACCAAGTCCTCGACCTACCCTCACGAATTGCTTTTACAATGATTCCAAGCTCCACATCCAAGATGATAATTTTCGACAATACGGTCTTTGGGAACGATACGCCGAATTGTATCCACATGGAGATCTTGTGTACAATGTCGACACTGATGATTACCATCGTAACTGGTTCTACGCTCATGTCACCCGAGCTACTGGTTCTGGTACCTATGAGGCAACAACGTGGCAAATTGTGTTTCATATTCAAAGGCCTAAACAGATCGGTAACTATATGCTTCGATTAGCCTTGGCCTCCTCAACTGATGCTGTGATCGATATCCGATTCAACAACCCTTCTACCAAACAACCTCATTTCACAACCGGGTATTGGTCATCAGGAAAGGATAACGCCATTGCCAGACATGGTATTCATGGGCTTCATTGGTTATTCAACTTCCAGGTTCCAAGCCAACTTTTGGTAGAAGGTCAAAACGTGATCTATCTAACACAAAGAAGACATACAGGAGAATTTCAAGGAGTAATGTACGACTACATACGGTTCGAAGATGTAGAGTAA 1905 44.2 MAALLFFFFGLALAMAVPPQQDSSQQILEENNNKAMLSRDVTLELQNHGQVIIDNGIVRVTLSRPDGDVIALKYNGIDNLLEIRNVQSNRGYWDVVWNRPNKASATDRYILRRGDSGFYSYGIFERLNGWPQIEVDQIRIAYKLLGDKFHYMAISDNRQRMMPTAEDRLTGKPLDYPEAVLLTRPRDPSFRGEVDDKYQYSLENMENKVHGWESSDPHVGFWMITPSDEFRTAGPVKQDLTSHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIETSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFAKYPQMWGDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEFYIPSPRPTLTNCFYNDSKLHIQDDNFRQYGLWERYAELYPHGDLVYNVDTDDYHRNWFYAHVTRATGSGTYEATTWQIVFHIQRPKQIGNYMLRLALASSTDAVIDIRFNNPSTKQPHFTTGYWSSGKDNAIARHGIHGLHWLFNFQVPSQLLVEGQNVIYLTQRRHTGEFQGVMYDYIRFEDVE* 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26531028 26534620 + CsaV3_6G044820.1 Csa06g03096 534723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03096 634 Pfam Rhamnogalacturonate lyase family 107 194 IPR010325 -
Csa06g03096 634 SUPERFAMILY Galactose-binding domain-like 433 631 IPR008979 -
Csa06g03096 634 SUPERFAMILY Galactose mutarotase-like 48 288 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa06g03096 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 101 - -
Csa06g03096 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 107 632 - -
Csa06g03096 634 Gene3D - 44 278 IPR014718 GO:0030246
Csa06g03096 634 Gene3D - 433 631 - -
Csa06g03096 634 SUPERFAMILY Starch-binding domain-like 369 426 IPR013784 GO:0030246
Csa06g03096 634 Gene3D - 323 425 - -
Csa06g03096 634 CDD RGL4_C 437 631 - -
Csa06g03096 634 CDD RGL4_M 326 423 IPR029413 -
Csa06g03096 634 Pfam Polysaccharide lyase family 4, domain II 349 422 IPR029413 -
Csa06g03096 634 Pfam Polysaccharide lyase family 4, domain III 435 629 IPR029411 -
Csa06g03096 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 101 - -
Csa06g03096 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 107 632 - -
Csa06g03096 634 CDD RGL4_N 50 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04506 Csa-Chr3:39289600 Csa06g03096 Csa-Chr6:26531028 0 dispersed
Csa06g03096 Csa-Chr6:26531028 Csa06g03509 Csa-Chr6:28655208 9.80E-179 dispersed
Csa02g02193 Csa-Chr2:19725119 Csa06g03096 Csa-Chr6:26531028 0 wgd
Csa03g04504 Csa-Chr3:39272026 Csa06g03096 Csa-Chr6:26531028 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03096 K18195 - csv:101206696 1292.33