Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03097 | ATGGGGAAATCACCGGCAGAACAGCACCCCAAAAAGGCTTTCGGATGGGCTGCATCCGACACCTCCGGCATTCTTTCTCCCTTTCATTTCTCCCGAAGAGAAACAGGGGAAAACGATGTAGCTTTTAAAGTTCTTTATTGTGGAATTTGTCATTCTGATCTTCACATGCTGAAGAATGAATGGGGCAATACTATTTACCCCATTGTTCCTGGTCATGAAATCGTGGGCGAGGTAACCGAGGTTGGAAGCAAAGTGAAGAATTTCAAGGTCGGAGACAAGGTTGGCGTAGGATGTATGGTTGGATCCTGCCGCTCCTGTGATAATTGTTCCAACAACCTTGAGAACTATTGCCCCAAAATGATCCTCACCTACTCCAGCAAGGAATCCGACGGCTCCATAACCTACGGAGGCTACTCCAACTGTATGGTTGCCGATGAGCATTTCATTGTTCGCATTCCCGATAGCATCCCTCTGCACGCCGGGGCTCCCCTGCTTTGTGCTGGTATCACAGTTTACAGCCCTTTGAGATACTATGGACTTGACAAGCCTGGAATGCAAATTGGTGTGGTTGGTCTTGGTGGGCTTGGCCATGTCGCCGTCAAATTTGCTAAGGCCTTCGGCGCTAAGGTTACTGTGATTAGTACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAAATGCAGGCTGCTAGGGGGACTTTGGACGGTATCATAGATACAGTCTCTGCTGCCCATCCCCTTCTTCCTCTGCTGTCTCTTATTAAAACACATGGAAAATTGGTTATGGTTGGTGCACCAGAGAAGCCACTGGAGATCCCAGCCTTTGCTCTTATTGGGGGTAGAAAAACAATGGCTGGTAGTTGCATTGGTGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATAACTGCAGACGTTGAGATGATTCCGATGGATGATGTCAATAAGGCAATGGAACGGATGCTGAAACAGGATGTCAAGTATCGATTTGTCATCGACATTGCTAACTCATTGAAGTCTAGCAGTTAA | 1086 | 47.33 | MGKSPAEQHPKKAFGWAASDTSGILSPFHFSRRETGENDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVGSCRSCDNCSNNLENYCPKMILTYSSKESDGSITYGGYSNCMVADEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGMQIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAARGTLDGIIDTVSAAHPLLPLLSLIKTHGKLVMVGAPEKPLEIPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEMIPMDDVNKAMERMLKQDVKYRFVIDIANSLKSSS* | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26534763 | 26537567 | - | CsaV3_6G044830.1 | Csa06g03097 | 534724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03097 | 361 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 71 | 85 | IPR002328 | GO:0008270|GO:0016491 | |
Csa06g03097 | 361 | Pfam | Zinc-binding dehydrogenase | 194 | 317 | IPR013149 | - | |
Csa06g03097 | 361 | Gene3D | - | 16 | 353 | - | - | |
Csa06g03097 | 361 | Pfam | Alcohol dehydrogenase GroES-like domain | 38 | 151 | IPR013154 | - | |
Csa06g03097 | 361 | CDD | CAD1 | 14 | 352 | - | - | |
Csa06g03097 | 361 | PANTHER | LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE | 2 | 359 | - | - | |
Csa06g03097 | 361 | SUPERFAMILY | GroES-like | 22 | 184 | IPR011032 | - | |
Csa06g03097 | 361 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 157 | 321 | IPR036291 | - | |
Csa06g03097 | 361 | Gene3D | - | 167 | 323 | - | - | |
Csa06g03097 | 361 | PANTHER | ALDEHYDE REDUCTASE | 2 | 359 | - | - | |
Csa06g03097 | 361 | SMART | PKS_ER_names_mod | 23 | 351 | IPR020843 | GO:0016491 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01585 | Csa-Chr2:14980394 | Csa06g03097 | Csa-Chr6:26534763 | 1.32E-167 | dispersed | |
Csa02g01586 | Csa-Chr2:14999476 | Csa06g03097 | Csa-Chr6:26534763 | 2.39E-173 | dispersed | |
Csa03g04299 | Csa-Chr3:37636221 | Csa06g03097 | Csa-Chr6:26534763 | 2.08E-147 | dispersed | |
Csa05g00138 | Csa-Chr5:746059 | Csa06g03097 | Csa-Chr6:26534763 | 2.18E-117 | dispersed | |
Csa06g03097 | Csa-Chr6:26534763 | Csa07g00715 | Csa-Chr7:5097058 | 2.88E-120 | dispersed | |
Csa06g03097 | Csa-Chr6:26534763 | Csa03g01819 | Csa-Chr3:13943841 | 1.30E-123 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03097 | - | K23232 | csv:101222715 | 720.694 |