Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03097 ATGGGGAAATCACCGGCAGAACAGCACCCCAAAAAGGCTTTCGGATGGGCTGCATCCGACACCTCCGGCATTCTTTCTCCCTTTCATTTCTCCCGAAGAGAAACAGGGGAAAACGATGTAGCTTTTAAAGTTCTTTATTGTGGAATTTGTCATTCTGATCTTCACATGCTGAAGAATGAATGGGGCAATACTATTTACCCCATTGTTCCTGGTCATGAAATCGTGGGCGAGGTAACCGAGGTTGGAAGCAAAGTGAAGAATTTCAAGGTCGGAGACAAGGTTGGCGTAGGATGTATGGTTGGATCCTGCCGCTCCTGTGATAATTGTTCCAACAACCTTGAGAACTATTGCCCCAAAATGATCCTCACCTACTCCAGCAAGGAATCCGACGGCTCCATAACCTACGGAGGCTACTCCAACTGTATGGTTGCCGATGAGCATTTCATTGTTCGCATTCCCGATAGCATCCCTCTGCACGCCGGGGCTCCCCTGCTTTGTGCTGGTATCACAGTTTACAGCCCTTTGAGATACTATGGACTTGACAAGCCTGGAATGCAAATTGGTGTGGTTGGTCTTGGTGGGCTTGGCCATGTCGCCGTCAAATTTGCTAAGGCCTTCGGCGCTAAGGTTACTGTGATTAGTACCTCGCCTAACAAGAAGCAGGAGGCTATTGAACGTCTTGGGGCTGATTCATTCTTGGTCAGCCGTGATCAAGAGCAAATGCAGGCTGCTAGGGGGACTTTGGACGGTATCATAGATACAGTCTCTGCTGCCCATCCCCTTCTTCCTCTGCTGTCTCTTATTAAAACACATGGAAAATTGGTTATGGTTGGTGCACCAGAGAAGCCACTGGAGATCCCAGCCTTTGCTCTTATTGGGGGTAGAAAAACAATGGCTGGTAGTTGCATTGGTGGGATGAAGGAAACACAAGAGATGATTGATTTTGCTGCCAAACACAACATAACTGCAGACGTTGAGATGATTCCGATGGATGATGTCAATAAGGCAATGGAACGGATGCTGAAACAGGATGTCAAGTATCGATTTGTCATCGACATTGCTAACTCATTGAAGTCTAGCAGTTAA 1086 47.33 MGKSPAEQHPKKAFGWAASDTSGILSPFHFSRRETGENDVAFKVLYCGICHSDLHMLKNEWGNTIYPIVPGHEIVGEVTEVGSKVKNFKVGDKVGVGCMVGSCRSCDNCSNNLENYCPKMILTYSSKESDGSITYGGYSNCMVADEHFIVRIPDSIPLHAGAPLLCAGITVYSPLRYYGLDKPGMQIGVVGLGGLGHVAVKFAKAFGAKVTVISTSPNKKQEAIERLGADSFLVSRDQEQMQAARGTLDGIIDTVSAAHPLLPLLSLIKTHGKLVMVGAPEKPLEIPAFALIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEMIPMDDVNKAMERMLKQDVKYRFVIDIANSLKSSS* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26534763 26537567 - CsaV3_6G044830.1 Csa06g03097 534724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03097 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Csa06g03097 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Csa06g03097 361 Gene3D - 16 353 - -
Csa06g03097 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Csa06g03097 361 CDD CAD1 14 352 - -
Csa06g03097 361 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 359 - -
Csa06g03097 361 SUPERFAMILY GroES-like 22 184 IPR011032 -
Csa06g03097 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 321 IPR036291 -
Csa06g03097 361 Gene3D - 167 323 - -
Csa06g03097 361 PANTHER ALDEHYDE REDUCTASE 2 359 - -
Csa06g03097 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01585 Csa-Chr2:14980394 Csa06g03097 Csa-Chr6:26534763 1.32E-167 dispersed
Csa02g01586 Csa-Chr2:14999476 Csa06g03097 Csa-Chr6:26534763 2.39E-173 dispersed
Csa03g04299 Csa-Chr3:37636221 Csa06g03097 Csa-Chr6:26534763 2.08E-147 dispersed
Csa05g00138 Csa-Chr5:746059 Csa06g03097 Csa-Chr6:26534763 2.18E-117 dispersed
Csa06g03097 Csa-Chr6:26534763 Csa07g00715 Csa-Chr7:5097058 2.88E-120 dispersed
Csa06g03097 Csa-Chr6:26534763 Csa03g01819 Csa-Chr3:13943841 1.30E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03097 - K23232 csv:101222715 720.694