Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03100 ATGCGTTATTTAAGGAAGTTGACGTTCTTCTATAATGGTTTAATTGGTACTGACTGTAAGATGGGAACTCAAGGTCAAACAGGATTAGTAGCACAAAAGAAGATGCACCCTCCTCAGTCCGGAAGATTTGAAGATCGTGAAGATCTTATTAAATATGTTCGCGATTTTGGTGCTGATCAGGGATATGTCGTAACAATTAAGAAGTCTAGGAAAGATAGAAGAGTCATCCTTGGTTGTGATAGAGGAGGTGTGTACCGTAACAGGCGTAAGATTGCTGAGAGTCCACGCAAAAGGAAAGCTAGCTCACGCCTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGAAGCCATAACCATGAGCCCTTAAAAGATAGGTCAGAGCATCCTTACAGTCGCCGTTTTACAGAGGATGAAGTAAAGCAAATAAAACTAATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATCTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGATAAGAATTTCAAGTCTTGGAGGCCTAATATTTCCGTTCCTACAAATAGTAGTCATACAGTCGCTGGGGATTCAATCAAGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCAAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTACGAAGAGTTTAAGGCTGCTGTCAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCAATTTATACTCGTCAGTGTGTTATGTTCAAGTTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTAATGAATATTGTTGCAGAACAGGGAAAAACATTAAAGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGCTTGTCGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAGTGCATCTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTCCCAATTGCAGTTACATGTGGCAATACATTTGTTCTTAAACCATGTGAAACGCACCCGGGGGCTTCAATGTTGCTAGCTTCATTAGCGATGGAGTCTGGCTTGCCTGATGGTGTTCTGAATATTGTTCATGGATCCCATGATATCATCAGCTATATATGTGACGATGAGGACATAAAAGCTGTATCCTTTTCCAGTTCAAGTTCAGTTGGAAAACACATATATGCTAGGGCTGCTGCTACAGCAAAGAAAGTTCAGTCTCATTTTGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTGGGTACTGTTGGACGGACATGTATGGCTATTGACATCATTGTCTCCGTTGGGAGTTCAACCCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGAACAGATCCCAATGCTGACCTTGGTCCTGTAACTACAAAAGAGGTGAAAAATCGTTTTTGTAAATTAATTCAAAGTGGCATTGAAGATGGTGCTAGACTTTTGCTAGACGGTAGAGATATCGTGGTCTCAGGATATGAAAATGGAAATTTTATCGGCCCAACCATTTTATCAGGTGTAACAACTGACATGGCGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTTTATGCAGGCTGACAACCTAGAGGAGGCTATAACCATTGTAAACCGAAACAAAAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAACGGTTGGTATCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGTAGGGCTGGAGTTTTACACCCAATTGAAGAGAGTGGCTCAACAGTGGAAGAACTCACCAAGTATTGGCGTCTCAATGGCGGTGCCTTCACCATCTGAGAGACATTTGAGATCCCGTGCTGCACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGTATGAAGCACAGGAGTTTACCTCCGTTGCCTTCCACATCTGACAGGGATTCACCCAGCGTCCCTGTACTTCTGCCGAACCCTCGAATAACTCCGACAGGCTTAACTAATGAAAGATCCACTTCCTCTCCGCCGACTCCTGATAGGAATTTGCACGGACTCTCCCTGATTTCTACCTTATCATCGGAGGGGGATGTATCCAACCAAGATTTGTCTCCTGCAATGCTTTCACAGCGTGATAGAGATTTACCTGGTCAAGCTATGTCAATGGCAACATCCAGATCATCTGATAGACTGTACATACCTCAGAAATCTCATTGGAATGAAACCCCGAGGGCTGATTCAATTCCATCCAGTTCCGAGAGGATCCATGCGTCTTTTTCGCAGACAAGCAGCATCAAAGGACAGGCATGTCGAACAACTCATCCTGCTTTGGTTTTAGCCACAGAGAGGGGGTTATATGTGCCAACATCTCATGACGCTATTTGTCTAATTAACCATGGAAATGATAGCACCAGTCCGTCTCGAAGAATGAACACCATGTGTCAATCATCAGAACGAGTATACATGCTAGCAACTTCTCATCTGAACGACAGTATGGGTCAAACATTGGAGAGAACTGATACCTCCTTGTTTCCTTCTTCAGAGAGGCATTATGCGCCTCCCTCTTCTGATGGAAATGACCACATCAGCTTAGCCTCTCATACAGATGTCACTTTGCAATCAACCTCAGATAGAATGTTTCTGTCTAGTTTGTCTGAAAGGGACGATAATATGGCTTCCACTGCTTCCCAACAAGGTGAATCTTTAACATCCACTTCAGAGAGAATGTATAGACCTCCATTGGTTCATAGAAATGCAGGTATGGCACCGAAATCGGAATGGTTATGCATTCCCACGCCTGCTGGAACTCAGAGAATGTACACACAAGATCCAATGGTTTCAGCAGATGAATTTCAATGCCAAGGAGCATCATTGACATTGCCTGCATCGCAAAGAATGTAA 3201 42.92 MRYLRKLTFFYNGLIGTDCKMGTQGQTGLVAQKKMHPPQSGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIAESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGSHNHEPLKDRSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSDKNFKSWRPNISVPTNSSHTVAGDSIKQNHQLKVPNLIGGEFLDSHNCQVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPIYTRQCVMFKFQELILRDMDKLVMNIVAEQGKTLKDAQDDIICGLEVVKHACRLATMQMGEFIPSASDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCETHPGASMLLASLAMESGLPDGVLNIVHGSHDIISYICDDEDIKAVSFSSSSSVGKHIYARAAATAKKVQSHFGGKSHAIIMPDANMEATLSALVDAGLGTVGRTCMAIDIIVSVGSSTLWEEKLVECAKALKVNVGTDPNADLGPVTTKEVKNRFCKLIQSGIEDGARLLLDGRDIVVSGYENGNFIGPTILSGVTTDMACYKEEFFGPVLLFMQADNLEEAITIVNRNKNRNGASIFTTSGIYARKFQSEVEVGTVGINVAVTVPLPSSFNDKVGLEFYTQLKRVAQQWKNSPSIGVSMAVPSPSERHLRSRAAPSMLVSTSEKDSPGMKHRSLPPLPSTSDRDSPSVPVLLPNPRITPTGLTNERSTSSPPTPDRNLHGLSLISTLSSEGDVSNQDLSPAMLSQRDRDLPGQAMSMATSRSSDRLYIPQKSHWNETPRADSIPSSSERIHASFSQTSSIKGQACRTTHPALVLATERGLYVPTSHDAICLINHGNDSTSPSRRMNTMCQSSERVYMLATSHLNDSMGQTLERTDTSLFPSSERHYAPPSSDGNDHISLASHTDVTLQSTSDRMFLSSLSERDDNMASTASQQGESLTSTSERMYRPPLVHRNAGMAPKSEWLCIPTPAGTQRMYTQDPMVSADEFQCQGASLTLPASQRM* 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26551837 26563175 + CsaV3_6G044860.1 Csa06g03100 534727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03100 1066 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 21 1065 - -
Csa06g03100 1066 MobiDBLite consensus disorder prediction 940 963 - -
Csa06g03100 1066 MobiDBLite consensus disorder prediction 762 785 - -
Csa06g03100 1066 SUPERFAMILY ALDH-like 225 696 IPR016161 GO:0016491
Csa06g03100 1066 Pfam Aldehyde dehydrogenase family 242 670 IPR015590 GO:0016491
Csa06g03100 1066 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 477 671 IPR016163 GO:0016620
Csa06g03100 1066 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 236 476 IPR016162 GO:0016491
Csa06g03100 1066 CDD ALDH_F6_MMSDH 232 694 IPR010061 GO:0004491
Csa06g03100 1066 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 234 694 IPR010061 GO:0004491
Csa06g03100 1066 MobiDBLite consensus disorder prediction 704 785 - -
Csa06g03100 1066 MobiDBLite consensus disorder prediction 987 1007 - -
Csa06g03100 1066 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 21 1065 IPR010061 GO:0004491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03100 Csa-Chr6:26551837 Csa07g00612 Csa-Chr7:4455770 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03100 K00140 - csv:101207178 2126.29