Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03115 ATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTGGCCCTCATTATCTTCTCTGCCACCGGAAAGCTGTTCGAGTACTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGCTGGTAGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAACTAAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGCTGATGGATGAGAATAAGCGATTGAAACAACAAGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAATTCCGTCACTGAAGTTTGTGTTTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGCTGCCGTATTCCGGATGA 687 46.58 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYSG* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26630513 26634616 - CsaV3_6G045010.1 Csa06g03115 534742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03115 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Csa06g03115 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g03115 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g03115 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g03115 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Csa06g03115 228 MobiDBLite consensus disorder prediction 192 228 - -
Csa06g03115 228 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Csa06g03115 228 Coils Coil 94 114 - -
Csa06g03115 228 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Csa06g03115 228 Coils Coil 143 177 - -
Csa06g03115 228 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
Csa06g03115 228 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01180 Csa-Chr4:10220360 Csa06g03115 Csa-Chr6:26630513 1.41E-61 dispersed
Csa06g03115 Csa-Chr6:26630513 Csa07g00595 Csa-Chr7:4326875 9.21E-69 dispersed
Csa02g02211 Csa-Chr2:19879642 Csa06g03115 Csa-Chr6:26630513 7.86E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32149 PF01486 K-box 2.20E-16 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03115 - - csv:101203152 434.106