Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03126 ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGAAAATAATGAATTTGATGAACGATGCTCAATTTCTCTGCCCCATCGAAGAAGAACCCGTGACCCCAATGTTGAATTTTTCGGATCCGAAAATTTTCTGGGCTCTTCTGTATTAGAGAGTGAAGAGAGAGTTAAAAGAATGGTTGAGAAAGAGATTGAGCATTTACCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGTCCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTGTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTTCCTCTTCCTATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAACTACTTGTTCTAAGTAGATTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCAGTGTTGAGCAGCAGAACATACCAAACCTATACTTCTCAAAATCATCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCTTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAAGAGAATTTCAAACACCAGATATGAATAAAGCAATTCTTTCTTTTCCATATATGGAGAAAGAAAGAGTGATGAAGTGTATTGATCTGATTAGAGATTTTTCATTGATTAGTAATGTATATGGAAATACATTGGGTGGTGGTAATGTTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTATTAACTGCAGGTTCATGTGGTAATGGTAATTCTTCTTCTTCTTCTTCTCATGACAGTCAAGACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATAATACAAGTCCATCCAGTCCTGTCAAATGA 1101 37.78 MADSFYCTENANICFDENNEFDERCSISLPHRRRTRDPNVEFFGSENFLGSSVLESEERVKRMVEKEIEHLPTHDYLKRMLSGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKISVEQQNIPNLYFSKSSQLILSTIKGIDFLEFKPSEIALAVAISISREFQTPDMNKAILSFPYMEKERVMKCIDLIRDFSLISNVYGNTLGGGNVGSVPQSPVGVLDAACLSYKTEELLTAGSCGNGNSSSSSSHDSQDSKRRRQDRPSSNDDNTSPSSPVK* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26701732 26703840 + CsaV3_6G045120.1 Csa06g03126 534753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03126 366 Gene3D - 73 190 - -
Csa06g03126 366 PANTHER CYCLIN-D4-1-LIKE 47 350 - -
Csa06g03126 366 Gene3D - 61 278 - -
Csa06g03126 366 SUPERFAMILY Cyclin-like 55 189 IPR036915 -
Csa06g03126 366 Pfam Cyclin, N-terminal domain 61 189 IPR006671 -
Csa06g03126 366 CDD CYCLIN 90 182 IPR013763 -
Csa06g03126 366 MobiDBLite consensus disorder prediction 340 354 - -
Csa06g03126 366 MobiDBLite consensus disorder prediction 326 366 - -
Csa06g03126 366 SUPERFAMILY Cyclin-like 174 291 IPR036915 -
Csa06g03126 366 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Csa06g03126 366 SMART cyclin_7 95 183 IPR013763 -
Csa06g03126 366 Pfam Cyclin, C-terminal domain 192 284 IPR004367 -
Csa06g03126 366 PANTHER CYCLINS 47 350 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02445 Csa-Chr4:24557946 Csa06g03126 Csa-Chr6:26701732 2.22E-42 dispersed
Csa04g02476 Csa-Chr4:24730194 Csa06g03126 Csa-Chr6:26701732 1.81E-28 dispersed
Csa05g02366 Csa-Chr5:25920091 Csa06g03126 Csa-Chr6:26701732 1.84E-52 dispersed
Csa06g02966 Csa-Chr6:25660299 Csa06g03126 Csa-Chr6:26701732 9.60E-45 dispersed
Csa06g03020 Csa-Chr6:26017996 Csa06g03126 Csa-Chr6:26701732 1.41E-34 dispersed
Csa06g03126 Csa-Chr6:26701732 Csa07g00732 Csa-Chr7:5194238 1.14E-44 dispersed
Csa04g00014 Csa-Chr4:114793 Csa06g03126 Csa-Chr6:26701732 1.25E-61 transposed
Csa06g01035 Csa-Chr6:8494138 Csa06g03126 Csa-Chr6:26701732 2.38E-38 transposed
Csa02g02191 Csa-Chr2:19704671 Csa06g03126 Csa-Chr6:26701732 6.54E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03126 K18810 - csv:101209378 693.73