Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g03128 | ATGGACATCGCGGCAGCGAGTTACGACGACTCGTTGCCCAACTCAGGAACCCGACTCAAAATCCCCACTACTACTGACCAAATCATGTCATCATCTCCTGGACAGAGGAAACCCAAATACAGAGAGTGCTTAAAAAATCACGCCGTTGGCATTGGAGGTCACGCCCTTGACGGTTGCGGCGAATTTCTAGCCGCTGGAGCTGAAGGTACACTCGACGCTCTTAAATGCGCCGCTTGTAACTGCCACCGCAACTTCCACCGTAAAGAAACCGACAACAACCTCAACCCCGCCGTAGGCGTCGGTCTCGGAATCGGAGAGCCATTTCTATTACCCCACCCAGGACAGTTCTCCCCTTACTACCGAACTCCAGCTGGGTACCTCCACGTGGCGCCACATCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAAGAACAGGAAGATATGTCGAATCCGAGCGGCGGAGGCGGCGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGAACAAAATTTACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGTTGGAGAATTCAAAAACACGACGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTAAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAGATGTGTTGAGTAA | 711 | 52.88 | MDIAAASYDDSLPNSGTRLKIPTTTDQIMSSSPGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNNLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGRCVE* | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 26710896 | 26715981 | - | CsaV3_6G045140.1 | Csa06g03128 | 534755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g03128 | 236 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 172 | 228 | IPR006455 | - | |
Csa06g03128 | 236 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 40 | 89 | IPR006456 | - | |
Csa06g03128 | 236 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa06g03128 | 236 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 24 | 232 | - | - | |
Csa06g03128 | 236 | Pfam | ZF-HD protein dimerisation region | 39 | 90 | IPR006456 | - | |
Csa06g03128 | 236 | Gene3D | - | 157 | 232 | - | - | |
Csa06g03128 | 236 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 39 | 89 | IPR006456 | - | |
Csa06g03128 | 236 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 24 | 232 | - | - | |
Csa06g03128 | 236 | SUPERFAMILY | Homeodomain-like | 159 | 233 | IPR009057 | - | |
Csa06g03128 | 236 | MobiDBLite | consensus disorder prediction | 135 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02058 | Csa-Chr2:18872023 | Csa06g03128 | Csa-Chr6:26710896 | 9.66E-59 | transposed | |
Csa04g00560 | Csa-Chr4:3724756 | Csa06g03128 | Csa-Chr6:26710896 | 1.92E-43 | transposed | |
Csa05g01927 | Csa-Chr5:22469732 | Csa06g03128 | Csa-Chr6:26710896 | 2.44E-59 | transposed | |
Csa06g03243 | Csa-Chr6:27375407 | Csa06g03128 | Csa-Chr6:26710896 | 8.91E-54 | transposed | |
Csa02g02187 | Csa-Chr2:19666125 | Csa06g03128 | Csa-Chr6:26710896 | 1.21E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32151 | PF04770 | ZF-HD_dimer | 9.50E-29 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g03128 | - | - | csv:101204784 | 479.944 |