Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03128 ATGGACATCGCGGCAGCGAGTTACGACGACTCGTTGCCCAACTCAGGAACCCGACTCAAAATCCCCACTACTACTGACCAAATCATGTCATCATCTCCTGGACAGAGGAAACCCAAATACAGAGAGTGCTTAAAAAATCACGCCGTTGGCATTGGAGGTCACGCCCTTGACGGTTGCGGCGAATTTCTAGCCGCTGGAGCTGAAGGTACACTCGACGCTCTTAAATGCGCCGCTTGTAACTGCCACCGCAACTTCCACCGTAAAGAAACCGACAACAACCTCAACCCCGCCGTAGGCGTCGGTCTCGGAATCGGAGAGCCATTTCTATTACCCCACCCAGGACAGTTCTCCCCTTACTACCGAACTCCAGCTGGGTACCTCCACGTGGCGCCACATCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAAGAACAGGAAGATATGTCGAATCCGAGCGGCGGAGGCGGCGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGAACAAAATTTACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGTTGGAGAATTCAAAAACACGACGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTAAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAGATGTGTTGAGTAA 711 52.88 MDIAAASYDDSLPNSGTRLKIPTTTDQIMSSSPGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNNLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGRCVE* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26710896 26715981 - CsaV3_6G045140.1 Csa06g03128 534755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03128 236 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 172 228 IPR006455 -
Csa06g03128 236 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 40 89 IPR006456 -
Csa06g03128 236 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03128 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 24 232 - -
Csa06g03128 236 Pfam ZF-HD protein dimerisation region 39 90 IPR006456 -
Csa06g03128 236 Gene3D - 157 232 - -
Csa06g03128 236 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 39 89 IPR006456 -
Csa06g03128 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 232 - -
Csa06g03128 236 SUPERFAMILY Homeodomain-like 159 233 IPR009057 -
Csa06g03128 236 MobiDBLite consensus disorder prediction 135 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02058 Csa-Chr2:18872023 Csa06g03128 Csa-Chr6:26710896 9.66E-59 transposed
Csa04g00560 Csa-Chr4:3724756 Csa06g03128 Csa-Chr6:26710896 1.92E-43 transposed
Csa05g01927 Csa-Chr5:22469732 Csa06g03128 Csa-Chr6:26710896 2.44E-59 transposed
Csa06g03243 Csa-Chr6:27375407 Csa06g03128 Csa-Chr6:26710896 8.91E-54 transposed
Csa02g02187 Csa-Chr2:19666125 Csa06g03128 Csa-Chr6:26710896 1.21E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32151 PF04770 ZF-HD_dimer 9.50E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03128 - - csv:101204784 479.944