Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03128 ATGGACATCGCGGCAGCGAGTTACGACGACTCGTTGCCCAACTCAGGAACCCGACTCAAAATCCCCACTACTACTGACCAAATCATGTCATCATCTCCTGGACAGAGGAAACCCAAATACAGAGAGTGCTTAAAAAATCACGCCGTTGGCATTGGAGGTCACGCCCTTGACGGTTGCGGCGAATTTCTAGCCGCTGGAGCTGAAGGTACACTCGACGCTCTTAAATGCGCCGCTTGTAACTGCCACCGCAACTTCCACCGTAAAGAAACCGACAACAACCTCAACCCCGCCGTAGGCGTCGGTCTCGGAATCGGAGAGCCATTTCTATTACCCCACCCAGGACAGTTCTCCCCTTACTACCGAACTCCAGCTGGGTACCTCCACGTGGCGCCACATCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAAGAACAGGAAGATATGTCGAATCCGAGCGGCGGAGGCGGCGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGAACAAAATTTACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGTTGGAGAATTCAAAAACACGACGAGGCGGTGGTGCAGCAGTTCTGTAACGACACCGGAGTAAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAGATGTGTTGAGTAA 711 52.88 MDIAAASYDDSLPNSGTRLKIPTTTDQIMSSSPGQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNNLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGRCVE* 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26710896 26715981 - CsaV3_6G045140.1 Csa06g03128 534755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03128 236 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 172 228 IPR006455 -
Csa06g03128 236 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 40 89 IPR006456 -
Csa06g03128 236 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g03128 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 24 232 - -
Csa06g03128 236 Pfam ZF-HD protein dimerisation region 39 90 IPR006456 -
Csa06g03128 236 Gene3D - 157 232 - -
Csa06g03128 236 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 39 89 IPR006456 -
Csa06g03128 236 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 232 - -
Csa06g03128 236 SUPERFAMILY Homeodomain-like 159 233 IPR009057 -
Csa06g03128 236 MobiDBLite consensus disorder prediction 135 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03128 - - - csv:101204784 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02058 Csa-Chr2:18872023 Csa06g03128 Csa-Chr6:26710896 9.66E-59 transposed
Csa04g00560 Csa-Chr4:3724756 Csa06g03128 Csa-Chr6:26710896 1.92E-43 transposed
Csa05g01927 Csa-Chr5:22469732 Csa06g03128 Csa-Chr6:26710896 2.44E-59 transposed
Csa06g03243 Csa-Chr6:27375407 Csa06g03128 Csa-Chr6:26710896 8.91E-54 transposed
Csa02g02187 Csa-Chr2:19666125 Csa06g03128 Csa-Chr6:26710896 1.21E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT2G02540 52.8 5.4e-51 198.4
Csa06g03128 . 37 231 ZF-HD Transcription Factor Family AT4G24660 51.3 1.0e-46 183.7
Csa03g03844 . 30 263 ZF-HD Transcription Factor Family AT5G39760 64.9 3.2e-49 192.6
Csa05g02983 . 24 261 ZF-HD Transcription Factor Family AT5G39760 57.3 4.2e-49 192.2
Csa05g02983 . 57 258 ZF-HD Transcription Factor Family AT1G69600 51.5 2.8e-47 185.7
Csa03g03844 . 12 299 ZF-HD Transcription Factor Family AT5G15210 52.7 5.2e-50 194.9
Csa05g02983 . 6 255 ZF-HD Transcription Factor Family AT5G15210 52.0 4.9e-48 188.3
Csa05g01927 . 78 287 ZF-HD Transcription Factor Family AT1G14440 54.1 9.9e-53 204.1
Csa03g03844 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.7 1.3e-60 230.3
Csa05g02983 . 16 257 ZF-HD Transcription Factor Family AT3G28920 62.5 1.7e-57 219.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32151 PF04770 ZF-HD_dimer 9.50E-29 No_clan Csa TF