Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03152 ATGAATCCTCCCACTTTTCCAATCGAATTTTCCGGCGATCCAATTCCGACCACCACTATTATCGGAAGCGGGGACCCCCGGATTGCCTTACAAAATCTCTCAACCATCCGTTCCAGAATGGATGCTCTCCAAATCTTCCTTTCCCATAACATCGACACAGAAGTTCGTATCAGTAATCAACAGATGGATGCCGTTTCATCTGAAATCTTCACCGCAGTCCAACAGATCATTGTCAACGGCGCCGCTCTTCTAACCTGCGCCCAATCGAAAACCCCTACTCCCCCGGATTTGACGGCTTCAGCAACTCGAACTCATCCGATTCTTGTAACAGATAAATCAATGGCGGAGCTGAAGGTGGAGGGTGCAGATGAGATTGCAATAACCGAATCTGAAGAATTTGACCCAGATTGGGAAATAGTGGAGCTGGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGAGACGCGAATTTACGGATGCATATGCGGGCCCATGGGAACCAATTCAAGACCCCAGAGGCTTTGGCTAAGCCGTTGGATGTTGTTGTTGGAGCGGACCACAGAGCGAAACGCACGCGATTCTCCTGCCCTTACGACGGTTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAATCCTTGATTTGCGTGAAGAATCACTTCAAGCGTAGCCACTGCCCTAAGATGTTCTCTTGTAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGATTTGAAAAGCCATTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGATAAGTTGTTTGGTCATATGGCGTTGTTCGAAGGCCACATGCCGGCAGTTCCGGATGACGCTTGTCCCACGACGGCGACGACGTCGGGAATGGATGAAGATGGAGAGAGTAATCAGATTTCGAAGGATGGTAATCTCCAAAACGGGTCCAATGGTTCGTCGGATGATGGATCTTTTGAGTCGTTTCTTGATGGGTTTGGTTTGATTGAGAATCAATGTTTAGAAGAGGTGCTGGGATTTCCTAATGATTTCGATTCGGAATCAGAATGGAAATTTTGTGGTTTTTGA 1131 47.57 MNPPTFPIEFSGDPIPTTTIIGSGDPRIALQNLSTIRSRMDALQIFLSHNIDTEVRISNQQMDAVSSEIFTAVQQIIVNGAALLTCAQSKTPTPPDLTASATRTHPILVTDKSMAELKVEGADEIAITESEEFDPDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDACPTTATTSGMDEDGESNQISKDGNLQNGSNGSSDDGSFESFLDGFGLIENQCLEEVLGFPNDFDSESEWKFCGF* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26881169 26883253 - CsaV3_6G045380.1 Csa06g03152 534779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03152 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Csa06g03152 376 MobiDBLite consensus disorder prediction 303 336 - -
Csa06g03152 376 SMART c2h2final6 242 264 IPR013087 -
Csa06g03152 376 SMART c2h2final6 204 237 IPR013087 -
Csa06g03152 376 SMART c2h2final6 270 294 IPR013087 -
Csa06g03152 376 SMART c2h2final6 153 175 IPR013087 -
Csa06g03152 376 MobiDBLite consensus disorder prediction 302 336 - -
Csa06g03152 376 Gene3D Classic Zinc Finger 230 299 - -
Csa06g03152 376 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 20 367 - -
Csa06g03152 376 Pfam Zinc finger, C2H2 type 154 175 IPR013087 -
Csa06g03152 376 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Csa06g03152 376 SUPERFAMILY beta-beta-alpha zinc fingers 150 176 IPR036236 -
Csa06g03152 376 Gene3D Classic Zinc Finger 153 176 - -
Csa06g03152 376 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 20 367 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03152 Csa-Chr6:26881169 Csa07g01329 Csa-Chr7:13185682 2.35E-78 dispersed
Csa06g03152 Csa-Chr6:26881169 Csa06g03225 Csa-Chr6:27277593 2.13E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32153 PF00096 zf-C2H2 0.00016 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03152 - - csv:101210849 743.421