Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03191 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCTCCGGCGCCGATCACCGACCCTAGTGAGATCGACCTTGAAGCTGGTCAAGGGGAACAAATTCAGTGTAGAATTTGCCTTGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCCAAATATGTTCATCGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCTCACTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGAAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACATACTTAATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTTGATAGCAAAATTAGTTTTTATTACATATGCGGGGCTTTATTATTTTTTGCATTGCTCGGCGTATCTGGCTGCTTCATCACTTGTTATGATCGAAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGTATGTGGACCGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATTGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCATTATTACTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTATAGTGTCTTGGTGGCTACCATGGTTGGCCAACGAATATGGCAACGACACTATCACATACTTGCGAAAAGAATGCTAACAAAGGTGGATGCCCAGCTGGCCGAGCACATCCATTCACGAGGGCTGTCTTATTGGTCTTTGGGATGA 927 43.91 MAGQPSDSSPLIPPAPITDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYLIDGCQHYWLRLTWGFDSKISFYYICGALLFFALLGVSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLLIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVDAQLAEHIHSRGLSYWSLG* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27104140 27109363 - CsaV3_6G045770.1 Csa06g03191 534818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03191 308 CDD RING_CH-C4HC3_MARCH 35 83 - -
Csa06g03191 308 SMART ringv_2 34 83 IPR011016 GO:0008270
Csa06g03191 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Csa06g03191 308 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Csa06g03191 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 289 - -
Csa06g03191 308 PANTHER BNAA04G12620D PROTEIN 6 289 - -
Csa06g03191 308 SUPERFAMILY RING/U-box 31 87 - -
Csa06g03191 308 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01955 Csa-Chr1:16410662 Csa06g03191 Csa-Chr6:27104140 2.49E-61 dispersed
Csa03g02748 Csa-Chr3:26340004 Csa06g03191 Csa-Chr6:27104140 5.88E-41 dispersed
Csa06g03191 Csa-Chr6:27104140 Csa02g00848 Csa-Chr2:7806720 8.51E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03191 - - csv:101214008 591.267