Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03212 ATGACGGGCCGAGGATCATCGGGAAGGACGCCGACATGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCCATTGCTGCCAAGATCTACACTGGCCTTAGAGCTCAAGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACAACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATAGGCACATCTGCGAATATGAGCGCCTGTTCTTCGCTTCAACCAAGCCCACAGTCTTCATGTTTCCCAAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTTCTTCAAAATATATCCTCTATTCCTGCTAATCTACCTCCTCTTAGGATATCCAACAGTGCACCTGTCACGCCACCTCTTTCTTCCCCAACTTCAAGGGGTTCGAAGCGAAAGCCAGATTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGTCATCCACTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGATTCTGGCCGCTGGGTCAGTTTCCAGACCGTGGCACCTTCTGTGGCTCCTCCTTCGCCTACATTTAACCTGATGAAACCAGTTAGCCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACGGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTTGATGATTTGGAGCTTACTCTTGGAGGTGGGAAGGCCCGTGGTTAA 960 48.96 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27211404 27213475 + CsaV3_6G045980.1 Csa06g03212 534839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03212 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Csa06g03212 319 MobiDBLite consensus disorder prediction 1 25 - -
Csa06g03212 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 318 - -
Csa06g03212 319 MobiDBLite consensus disorder prediction 155 179 - -
Csa06g03212 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 318 IPR033264 GO:0003700|GO:0006351|GO:0009742
Csa06g03212 319 MobiDBLite consensus disorder prediction 155 171 - -
Csa06g03212 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03212 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02032 Csa-Chr2:18745171 Csa06g03212 Csa-Chr6:27211404 4.78E-97 dispersed
Csa04g00815 Csa-Chr4:5720049 Csa06g03212 Csa-Chr6:27211404 3.24E-43 dispersed
Csa06g03212 Csa-Chr6:27211404 Csa04g00708 Csa-Chr4:4795128 2.97E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02032 . 1 312 BZR Transcription Factor Family AT1G75080 59.6 1.1e-89 327.0
Csa06g03212 . 28 320 BZR Transcription Factor Family AT1G75080 59.4 9.3e-81 297.4
Csa02g02032 . 1 312 BZR Transcription Factor Family AT1G19350 60.1 3.2e-89 325.5
Csa06g03212 . 28 320 BZR Transcription Factor Family AT1G19350 59.3 3.3e-78 288.9
Csa06g03212 . 6 320 BZR Transcription Factor Family AT3G50750 57.8 1.8e-77 286.2
Csa02g02032 . 1 312 BZR Transcription Factor Family AT3G50750 51.7 4.2e-63 238.4
Csa04g00815 . 77 326 BZR Transcription Factor Family AT4G18890 55.1 3.4e-49 191.8
Csa01g02293 . 80 328 BZR Transcription Factor Family AT4G18890 51.6 1.2e-46 183.3
Csa04g00815 . 1 326 BZR Transcription Factor Family AT1G78700 72.5 2.9e-116 415.2
Csa01g02293 . 1 328 BZR Transcription Factor Family AT1G78700 68.1 6.4e-103 370.9
Csa06g03212 . 28 200 BZR Transcription Factor Family AT4G36780 79.1 3.6e-64 241.9
Csa02g02032 . 33 204 BZR Transcription Factor Family AT4G36780 63.2 1.3e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32156 PF05687 BES1_N 1.80E-64 No_clan Csa TF