Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03212 ATGACGGGCCGAGGATCATCGGGAAGGACGCCGACATGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGGGCCATTGCTGCCAAGATCTACACTGGCCTTAGAGCTCAAGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACAACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATAGGCACATCTGCGAATATGAGCGCCTGTTCTTCGCTTCAACCAAGCCCACAGTCTTCATGTTTCCCAAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTTGATGGGAATCCATCTTCTTATCTTCTGCCATTTCTTCAAAATATATCCTCTATTCCTGCTAATCTACCTCCTCTTAGGATATCCAACAGTGCACCTGTCACGCCACCTCTTTCTTCCCCAACTTCAAGGGGTTCGAAGCGAAAGCCAGATTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGTCATCCACTTTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCGGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGATTCTGGCCGCTGGGTCAGTTTCCAGACCGTGGCACCTTCTGTGGCTCCTCCTTCGCCTACATTTAACCTGATGAAACCAGTTAGCCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACGGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTTGATGATTTGGAGCTTACTCTTGGAGGTGGGAAGGCCCGTGGTTAA 960 48.96 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27211404 27213475 + CsaV3_6G045980.1 Csa06g03212 534839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03212 319 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 129 IPR008540 -
Csa06g03212 319 MobiDBLite consensus disorder prediction 1 25 - -
Csa06g03212 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 318 - -
Csa06g03212 319 MobiDBLite consensus disorder prediction 155 179 - -
Csa06g03212 319 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 318 IPR033264 GO:0003700|GO:0006351|GO:0009742
Csa06g03212 319 MobiDBLite consensus disorder prediction 155 171 - -
Csa06g03212 319 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02032 Csa-Chr2:18745171 Csa06g03212 Csa-Chr6:27211404 4.78E-97 dispersed
Csa04g00815 Csa-Chr4:5720049 Csa06g03212 Csa-Chr6:27211404 3.24E-43 dispersed
Csa06g03212 Csa-Chr6:27211404 Csa04g00708 Csa-Chr4:4795128 2.97E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32156 PF05687 BES1_N 1.80E-64 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03212 K14503 - csv:101216171 579.326