Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03214 ATGCTAAAGTGTTTTTTGGTCATAGCTTCGTTGATCTTCATCTCCTCCACATTTGCACAACACAATCTTCGTCCTAAAGAAAAATGGCTCACTTTGAAAGGGGATCATCCACTCGTAATAGCAAGAGGAGGATTATCTGGAGTGTTTCCAGAAGCAAGCCCTTTTGCAAATCAAATGGCTGTGGTTACAGGTTTACATAACACAGCTTTGTATTGTAATCTTCAACTCACCAAAGATGGGATTGGCTTTTGCTTAACTGATCTTAGGCTTCAAAATTCAACCAATATTGAAGATGCCTTTCCTCGTGATCGCAAGTCTTATACTATCAATGGAAAGATTCTCAAGGGATGGTTCTCTGTTGATATCATGTCTAATGATCTCTTTGACAGAGTCAACTTGATTCAAAGTGTCCTCTCTCGACCTAGTCTCTACGACGGTACTTTGCCAATCGCGGCTGTTGAAGATGTCTTTAAAATGAATCCGAGTCAATTCTGGTTGAATGCCGAGTACGAAGCGTTCTATGCAGAACACGGTCTGAGTGTAATATCGTACCTTCAAAAGGCATTGAGATTGATGCGAATAAACTTTGTGTCGTCTTCAGAGATTGGGATATTGAAAGGGATAAGTGGGAGTGTGAATAAAGCTAGAACAAAGCTGATATTCAGATTCTTAGAAGCTAATGAAATAGAGCCAACAACAAAGAAAACATATGGTGCCTTGGCTCATGAACTTCCTATGATTAAGACATTTGCCTCAGGAATTCTGATCAGAAAAGAATATATTTGGCCAATCGGTCCAGACAAGTATGTGCAGCCTGCAACAAACATTGTCATTGATGCTCATAAGCTTGGCTTGGAAGTTTATGCTTCTGGCTTTGCAAATGATGCCATTGTTGGTTACAATTATAGTTATGATCCAATCCGTGAGTACCTTCAGTTTTTTGATAATGGCCATTTTGCTGTTGATGGAGTCCTTTCTGATTTCTCTCCCGCTGCGTCTCAAGCCATTGCCTGCTATTCGAGTTTTCATAACGATGGAAAACCTCAGCCTGGATTAGAGCAAGCATTGGTGATAAGCAGCAATGGAGCAAGTGGGGATTTCCCAGGCTCAACTGACCTTGCTTACCAAAAAGCAATTGATGAAGGAGCTGATGTCATTGATTGTTCAGTTCAATTATCCAAAGATGGAGTTCCTTTCTGTATGGAAATGGCAGATCTTTTGACAGGTACAACTGTTATCACTGCTTTCTCAGCAAAAACTACAAGTATCCCTGAAGTTCAAGCTGAACCTGGAATCTTCTCTTTTGATCTTACTTGGGCTGAGATTCTTACTCTCAAACCTCAAATTTCAAACCCTTTCATGGCCTCTTCTGGTCTTGCTCGTAATCCAGCCTTTAAGAACAAGGGCAAGTTCATGACACTGCCTGAGTTTCTTGAGTTTTCTAAAGCCAAAGCTGTTTCTGGGATTATGATCAACATCCAAAACGCTGCGTATTTGGCTTCAAGGAAAGGTCTGGACATGGTGGGAACTGTAGCAACAGCCTTAGTCAATGCCACTTTTGACAAACAATCAACACAACAAGTTTTCATTAGATCAGATGATACTTCTGTGCTGTCCGTTTTCAAGACTAAGTACCCAAATTTCATTAGAGTTTTAACTGTTGATTCAAAGATTGGAGATGCCCCAAAAGAAGCTCTTGAAGAAATCAAACACTATGCTGAAGTTGTGGCCATTCCTCGTGGCTCTGTCATTGAAATTACAAACTATTTCACTACTGGCCTCACTAAAGTTGTTGCTGAAATGAAGGCTTCCAATCTCTCTGTCTTTGTTTATGTCATGAGAAATGAATATGTTTCCTTGCCCTTTGATTACTACTCAGAAGCCTCCATGGAGGTTTCTACTTTTGTCGACTACTTCCACGTTGATGGCATCATTACCGAATTCCCTAATACTGCAAAACGATACATGACATGTCCATGCCGACCAACTCAGCTGAACCCGGATACTGCTCCATATATAATACTACCACCTGATATTGGTATGATGATGAATATGGTAGACCCAGAGGCCAAACCACCTACTGATCCTCCAATGCCCCCGTTGGATGCTAATGACATTGTCGATCCACCGCTCCCCGGGGTGAACAAAATGGCGACAACGACTCCTTCAGATGCTGCAGACATGCCTGCCGCGCCAGCCCCATCAGGCAGTGTATCAAATGTTGCTAACTTGTTTGTTTCTCTAGTCTCAGTTGTTGTGCTTACCTTCTTCATATCACTGTAA 2283 41.57 MLKCFLVIASLIFISSTFAQHNLRPKEKWLTLKGDHPLVIARGGLSGVFPEASPFANQMAVVTGLHNTALYCNLQLTKDGIGFCLTDLRLQNSTNIEDAFPRDRKSYTINGKILKGWFSVDIMSNDLFDRVNLIQSVLSRPSLYDGTLPIAAVEDVFKMNPSQFWLNAEYEAFYAEHGLSVISYLQKALRLMRINFVSSSEIGILKGISGSVNKARTKLIFRFLEANEIEPTTKKTYGALAHELPMIKTFASGILIRKEYIWPIGPDKYVQPATNIVIDAHKLGLEVYASGFANDAIVGYNYSYDPIREYLQFFDNGHFAVDGVLSDFSPAASQAIACYSSFHNDGKPQPGLEQALVISSNGASGDFPGSTDLAYQKAIDEGADVIDCSVQLSKDGVPFCMEMADLLTGTTVITAFSAKTTSIPEVQAEPGIFSFDLTWAEILTLKPQISNPFMASSGLARNPAFKNKGKFMTLPEFLEFSKAKAVSGIMINIQNAAYLASRKGLDMVGTVATALVNATFDKQSTQQVFIRSDDTSVLSVFKTKYPNFIRVLTVDSKIGDAPKEALEEIKHYAEVVAIPRGSVIEITNYFTTGLTKVVAEMKASNLSVFVYVMRNEYVSLPFDYYSEASMEVSTFVDYFHVDGIITEFPNTAKRYMTCPCRPTQLNPDTAPYIILPPDIGMMMNMVDPEAKPPTDPPMPPLDANDIVDPPLPGVNKMATTTPSDAADMPAAPAPSGSVSNVANLFVSLVSVVVLTFFISL* 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27226701 27230710 - CsaV3_6G046000.1 Csa06g03214 534841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03214 760 CDD GDPD_SHV3_repeat_2 355 655 - -
Csa06g03214 760 CDD GDPD_SHV3_repeat_1 37 335 - -
Csa06g03214 760 Pfam Glycerophosphoryl diester phosphodiesterase family 361 651 IPR030395 GO:0006629|GO:0008081
Csa06g03214 760 ProSiteProfiles GP-PDE domain profile. 37 336 IPR030395 GO:0006629|GO:0008081
Csa06g03214 760 ProSiteProfiles GP-PDE domain profile. 355 656 IPR030395 GO:0006629|GO:0008081
Csa06g03214 760 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 3 758 - -
Csa06g03214 760 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL6-RELATED 3 758 - -
Csa06g03214 760 SUPERFAMILY PLC-like phosphodiesterases 356 656 IPR017946 GO:0006629|GO:0008081
Csa06g03214 760 SUPERFAMILY PLC-like phosphodiesterases 35 334 IPR017946 GO:0006629|GO:0008081
Csa06g03214 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 354 657 IPR017946 GO:0006629|GO:0008081
Csa06g03214 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 35 336 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03214 Csa-Chr6:27226701 Csa07g00986 Csa-Chr7:8736540 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03214 - - csv:101216172 1444.48