Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03219 ATGGCCGCCGTGAATCTCCGACCGGACGCCGACAACTCATTACTCGTTTCCCATCTCTACAACCCTGAAGTTTACACCCAACAAGTGTTACCCCAACAAGGTACGGGAGAGGGAAGTAAGCCGACGAAGCGACGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTGTTCTACAAAAATCCCATCTTGAATCTGAGTTGATGAAAGTGAAAGAGCAGTTGAAAGAAGCAAAGAATGAGATACGAAAAATGGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGTCCAAGCTCTTCAGTGACGATGGAAGCAGTTGAGGAAGCAGCAGTAGTTCCTTTGGGGGAGCTTTTTTTTGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGATTGAACTGGGCGCTTAATCTTAATTTTATGTAG 675 45.48 MAAVNLRPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVVLQKSHLESELMKVKEQLKEAKNEIRKMVEGSEVRNNSSNSPSSSVTMEAVEEAAVVPLGELFFEEYEDVFYCMQDNNYNQGLNWALNLNFM* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27254198 27256020 + CsaV3_6G046050.1 Csa06g03219 534846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03219 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 11 218 - -
Csa06g03219 224 SUPERFAMILY Homeodomain-like 61 125 IPR009057 -
Csa06g03219 224 MobiDBLite consensus disorder prediction 29 64 - -
Csa06g03219 224 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Csa06g03219 224 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Csa06g03219 224 CDD homeodomain 61 117 IPR001356 GO:0003677
Csa06g03219 224 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Csa06g03219 224 SMART HOX_1 59 120 IPR001356 GO:0003677
Csa06g03219 224 Coils Coil 108 167 - -
Csa06g03219 224 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Csa06g03219 224 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Csa06g03219 224 Gene3D - 56 124 - -
Csa06g03219 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 218 IPR045224 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00524 Csa-Chr4:3446253 Csa06g03219 Csa-Chr6:27254198 7.13E-60 dispersed
Csa06g03219 Csa-Chr6:27254198 Csa05g02432 Csa-Chr5:26297535 2.68E-26 dispersed
Csa06g03219 Csa-Chr6:27254198 Csa06g02646 Csa-Chr6:23270808 5.32E-28 transposed
Csa06g03219 Csa-Chr6:27254198 Csa03g03360 Csa-Chr3:30395800 5.27E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32157 PF00046 Homeodomain 6.40E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03219 K09338 - csv:101216890 407.142