Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g03220 ATGTCGGACCATTCCGATGAACAACACTCCTTCAGAACAATTACCACTGCTTTCATTCCGTTCATTGGAGACGATGATTCTGATGATTCGGGTTCTGACTTCGTCTTCAGCATCGAACCTACTTTGCTCATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGCTCCATTGTCTATGAAGGATTGTATGATTATCAGCCTGTCGCCGTGAAGATTATACAGCCAATTAGAGCATCAGCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTACGTTGCTAGCTAGACTGAATCATGAGAACATTATTAAGTTCATTGGTGCTTCCATAGAGCCAACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTCGAAGTTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGACATACCTGCATTCAAATGGCATCATTTATCGCGATTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGATTAAACTGGCAAACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGTTATTTAGCATAGATCCATTGCCTGTTGGATGTAAGAAATGCTACGATCATAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACCAACAAGACTCCATTCAAAGGCAGAAATGACATAATGGTTGCATATGCCGTAGCCAAGAACATAAGACCATGTCTTGAAGAAATCCCAGAAGATATGGCTCCTCTATTGCAGTCATGTTGGGCTGAGGATCCCAATAGCCGTCCAGAATTTACAGAAGTCACAGATTATCTTAGTAATCTTCTTCAATCATTTGTCTTAAAAGAATCTTCACTTCCTAACATGGATGACAAAACAGAGGAGAAGGAGGAGGAGGAGAAGGTCAAGTGTAGATCAAACACATCGTTTTCTCAGAGAAAGAGAGAGCCAAAGGCTGGAAGATATAGAAACTCTTCATTCTGCTTCAAATGTTGCCACAACTCCTGCTTGTCTGATTAA 1125 41.87 MSDHSDEQHSFRTITTAFIPFIGDDDSDDSGSDFVFSIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDYQPVAVKIIQPIRASAISPEKKERFQREVTLLARLNHENIIKFIGASIEPTLMIITELMRGGTLQKYLWSIRPETPDSKFSLSLALDLSRVMTYLHSNGIIYRDLKPSNLLLTEDKQRIKLANFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGCKKCYDHKADVYSFSIILWELLTNKTPFKGRNDIMVAYAVAKNIRPCLEEIPEDMAPLLQSCWAEDPNSRPEFTEVTDYLSNLLQSFVLKESSLPNMDDKTEEKEEEEKVKCRSNTSFSQRKREPKAGRYRNSSFCFKCCHNSCLSD* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27257598 27261281 + CsaV3_6G046060.1 Csa06g03220 534847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g03220 374 MobiDBLite consensus disorder prediction 322 355 - -
Csa06g03220 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Csa06g03220 374 Pfam Protein tyrosine and serine/threonine kinase 49 306 IPR001245 GO:0004672|GO:0006468
Csa06g03220 374 PANTHER SERINE-THREONINE PROTEIN KINASE 24 339 - -
Csa06g03220 374 ProSiteProfiles Protein kinase domain profile. 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03220 374 SMART serkin_6 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g03220 374 SUPERFAMILY Protein kinase-like (PK-like) 42 319 IPR011009 -
Csa06g03220 374 CDD STKc_MAP3K-like 55 307 - -
Csa06g03220 374 Gene3D Phosphorylase Kinase; domain 1 39 129 - -
Csa06g03220 374 PRINTS Tyrosine kinase catalytic domain signature 125 138 IPR001245 GO:0004672|GO:0006468
Csa06g03220 374 PRINTS Tyrosine kinase catalytic domain signature 163 181 IPR001245 GO:0004672|GO:0006468
Csa06g03220 374 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Csa06g03220 374 PRINTS Tyrosine kinase catalytic domain signature 278 300 IPR001245 GO:0004672|GO:0006468
Csa06g03220 374 Gene3D Transferase(Phosphotransferase) domain 1 130 354 - -
Csa06g03220 374 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 24 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03981 Csa-Chr3:34800785 Csa06g03220 Csa-Chr6:27257598 7.06E-84 dispersed
Csa06g03220 Csa-Chr6:27257598 Csa06g00537 Csa-Chr6:4558344 9.70E-63 dispersed
Csa06g03220 Csa-Chr6:27257598 Csa05g01889 Csa-Chr5:22098286 3.66E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78425 PF07714 PK_Tyr_Ser-Thr 2.30E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g03220 - - csv:101216416 742.651